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AgeCommit message (Expand)Author
2021-08-04Fix issues caught by pylintMuriithi Frederick Muriuki
2021-08-04Retrieve the RISet and RISet ID valuesMuriithi Frederick Muriuki
2021-08-04Add tests for post-processing functionsMuriithi Frederick Muriuki
2021-08-04Update testsMuriithi Frederick Muriuki
2021-07-30Remove extra spaceMuriithi Frederick Muriuki
2021-07-30Return dict from query functionsMuriithi Frederick Muriuki
2021-07-29Merge branch 'main' into Feature/Update-db-from-csv-dataBonfaceKilz
2021-07-29Delete "update_raw" and it's test-casesBonfaceKilz
2021-07-29Add method for updating values from a sample datasetBonfaceKilz
2021-07-29Retrieve trait informationMuriithi Frederick Muriuki
2021-07-29Make name retrieval more generalMuriithi Frederick Muriuki
2021-07-29Retrieve 'ProbeSet' trait nameMuriithi Frederick Muriuki
2021-07-26tests: test_db: Add test case for "update_raw"BonfaceKilz
2021-07-26Fix issues caught by pylintMuriithi Frederick Muriuki
2021-07-23Add data examples for `slink`. Implement function.Muriithi Frederick Muriuki
2021-07-23Add more test dataMuriithi Frederick Muriuki
2021-07-23Fix issue caught in `nearest` while testing `slink`Muriithi Frederick Muriuki
2021-07-23New function (`slink`): return [] on exceptionMuriithi Frederick Muriuki
2021-07-22Get shortest distance from two lists/tuples of member coordinatesMuriithi Frederick Muriuki
2021-07-22Test for shortest distance between members in a list and coordinateMuriithi Frederick Muriuki
2021-07-22Check that given list and both coordinates, we get shortest distanceMuriithi Frederick Muriuki
2021-07-22Check that all distances are positive or zeroMuriithi Frederick Muriuki
2021-07-22Check that distance from A to B is same as from B to AMuriithi Frederick Muriuki
2021-07-22Check that child distance from itself is zeroMuriithi Frederick Muriuki
2021-07-21Extract tests from code in GN1Muriithi Frederick Muriuki
2021-07-20Add test for code to move over from GN1Muriithi Frederick Muriuki
2021-07-10Fix pylint issuesBonfaceKilz
2021-07-10db: test_db: Test that a fetch is correct when columns are specifiedBonfaceKilz
2021-06-29tests: test_commands: Add extra check for when an error occursBonfaceKilz
2021-06-29Add a diffing functionBonfaceKilz
2021-06-20merge mainAlexander Kabui
2021-06-20make requested changes to biweightAlexander Kabui
2021-06-18Fixed another error where test_generate_rqtl_command didn't include the filen...zsloan
2021-06-18Fixed file type from json to csv for test_generate_rqtl_commandzsloan
2021-06-18Fixed test_rqtl.py to include Rscript in the commandzsloan
2021-06-18Fixed test_compose_rqtl_command test; forgot to include Rscript in the commandzsloan
2021-06-18Change test_compose_rqtl_command in test_commands.py to have different argume...zsloan
2021-06-18db: test_db: Add extra variable in test data for "id"BonfaceKilz
2021-06-18Rename json_data column to json_diff_dataBonfaceKilz
2021-06-18tests: test_db: Add a test-case for fetchallBonfaceKilz
2021-06-18tests: test_db: Rename TestPhenotypeBonfaceKilz
2021-06-18tests: test_phenotype: Rename to test_dbBonfaceKilz
2021-06-18Use prepared statements for FETCH sql functionBonfaceKilz
2021-06-18Use prepared statements for UPDATE sql functionBonfaceKilz
2021-06-18tests: test_audit: Update test case to check for prepared statementsBonfaceKilz
2021-06-18Add data structures for the table metadata_auditBonfaceKilz
2021-06-18unit: test_phenotypes: Test for multiple "WHERE" clausesBonfaceKilz
2021-06-18Get the diff between 2 dicts and return that as a dictBonfaceKilz
2021-06-18fix index error (#16)Alexander Kabui
2021-06-18Move the methods, "update" and "fetch", to gn3.dbBonfaceKilz
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