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AgeCommit message (Expand)Author
2021-10-19Disable pylint issueFrederick Muriuki Muriithi
2021-10-19Implement `control_samples` function as is in GN1Frederick Muriuki Muriithi
2021-10-19Move `export_informative` function to `gn3.db.traits` moduleFrederick Muriuki Muriithi
2021-10-19Move 'export_trait_data' to 'gn3.db.traits' moduleFrederick Muriuki Muriithi
2021-10-19Migrate `export_informative` functionFrederick Muriuki Muriithi
2021-09-28Retrieve loci names ordered by chromosomesFrederick Muriuki Muriithi
2021-09-27modify unittestsAlexander Kabui
2021-09-27add tests for calling wgcna_scriptAlexander Kabui
2021-09-27fix merge conflictsAlexander Kabui
2021-09-27Update terminology: `riset` to `group`Frederick Muriuki Muriithi
2021-09-27Update terminology: `strain` to `sample`Frederick Muriuki Muriithi
2021-09-25minor fixes for unittestsAlexander Kabui
2021-09-23Refactor: Move common sample data to separate fileFrederick Muriuki Muriithi
2021-09-22Fix more pylint errorsFrederick Muriuki Muriithi
2021-09-22add init tests for call to scriptAlexander Kabui
2021-09-17Fix a number of linting issuesFrederick Muriuki Muriithi
2021-09-16pylint fixesAlexander Kabui
2021-09-16init tests for wgcnaAlexander Kabui
2021-09-15initial test file for wgcnaAlexander Kabui
2021-09-15Process data into format usable by heatmapsFrederick Muriuki Muriithi
2021-09-15Integrate get_lsr_from_chr functionFrederick Muriuki Muriithi
2021-09-15Reorganise modulesFrederick Muriuki Muriithi
2021-09-15Fix format of arguments and expected valuesFrederick Muriuki Muriithi
2021-09-15Add missing sample file for testsFrederick Muriuki Muriithi
2021-09-08Ease search for traits and chromosomesMuriithi Frederick Muriuki
2021-09-08Fix the traits order computations for clusteringMuriithi Frederick Muriuki
2021-09-06Provide function to organise parsed QTLReaper resultsMuriithi Frederick Muriuki
2021-09-06Leave "Chr" value as string when parsingMuriithi Frederick Muriuki
2021-09-01Fix linting and typing issuesMuriithi Frederick Muriuki
2021-09-01Built top-level genotype file parsing functionMuriithi Frederick Muriuki
2021-09-01Parse data lines into markersMuriithi Frederick Muriuki
2021-09-01Parse the genotype file's data headerMuriithi Frederick Muriuki
2021-09-01Implement parsing of genotype labelsMuriithi Frederick Muriuki
2021-08-31Fix linting errors, minor bugs and reorganise codeMuriithi Frederick Muriuki
2021-08-31Fix testMuriithi Frederick Muriuki
2021-08-31Parse QTLReaper outputsMuriithi Frederick Muriuki
2021-08-20Merge branch 'main' of github.com:genenetwork/genenetwork3 into heatmap_gener...Muriithi Frederick Muriuki
2021-08-20Retrieve the strains with valid valuesMuriithi Frederick Muriuki
2021-08-20Add tests for ordering and implement functionMuriithi Frederick Muriuki
2021-08-20Minor correlation fixes (#36)Alexander Kabui
2021-08-18Test the clusteringMuriithi Frederick Muriuki
2021-08-18Add tests and fix errors caught with testsMuriithi Frederick Muriuki
2021-08-17Test the clusteringMuriithi Frederick Muriuki
2021-08-17Add tests and fix errors caught with testsMuriithi Frederick Muriuki
2021-08-16Merge pull request #32 from genenetwork/heatmap_decompose_db_retrievalBonfaceKilz
2021-08-11use normal function for correlation (#34)Alexander Kabui
2021-08-09Set up the trait dataset type correctlyMuriithi Frederick Muriuki
2021-08-09Fix linting errorsMuriithi Frederick Muriuki
2021-08-08Update testsMuriithi Frederick Muriuki
2021-08-05Reorganise the database codeMuriithi Frederick Muriuki
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