genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2022-05-30	Pass trait data as args to `fix_strains` and fix some bugs	Frederick Muriuki Muriithi
2022-05-27	Move sql for CRUD operations on case-attrs from gn2 to gn3	BonfaceKilz
2022-05-27	Move sql for modifying case-attributes from gn2 to gn3	BonfaceKilz
2022-05-27	Return all the results from CaseAttributes column as is	BonfaceKilz
2022-05-26	Add Endpoint to get menu items for use in UI	Frederick Muriuki Muriithi
2022-04-12	Delete "get_allowable_sampledata_headers"	BonfaceKilz
2022-04-12	Test that a carriage return is removed when generating csv	BonfaceKilz
2022-04-07	Use case attribute id inside brackets if present during insertions	BonfaceKilz
2022-04-07	Use case attribute id inside brackets if present during insertions	BonfaceKilz
2022-04-07	Use case attribute id inside brackets if present during updates	BonfaceKilz
2022-04-07	Add method for fetching the case_attributes	BonfaceKilz
2022-04-07	Add method for parsing a csv header from uploaded sample-data file	BonfaceKilz
2022-04-01	Run python-black in file	BonfaceKilz
2022-03-18	Clean all csv fields before diffing	BonfaceKilz
2022-03-18	Create new function for cleaning individual fields in csv text	BonfaceKilz
2022-03-15	Feature/refactored pca (#79)	Alexander Kabui
2022-03-14	Sort import lines	BonfaceKilz
2022-03-14	Given a csv text and permissible headers, extract invalid headers	BonfaceKilz
2022-03-14	Get all permissible column data	BonfaceKilz
2022-03-12	Fix pylint errors in unit_tests	BonfaceKilz
2022-03-12	Append the strain name when extracting "actions"	BonfaceKilz
2022-03-12	Apply auto-pep8 to sample_data.py and it's test file	BonfaceKilz
2022-03-12	Update how data is updated by re-using existing functions	BonfaceKilz
2022-03-12	Create action dict that's created when updating data	BonfaceKilz
2022-03-12	Add test cases for inserting and deleting data	BonfaceKilz
2022-03-12	Fill in empty values in csv text with: "x"	BonfaceKilz
2022-03-12	Remove test cases related to sample data	BonfaceKilz
2022-03-12	Extract a strain name given a csv string and it's header	BonfaceKilz
2022-03-12	Don't add extra key "Column" to dict if there are no changes	BonfaceKilz
2022-03-12	Test edges cases for csv files when running csvdiff	BonfaceKilz
2022-03-12	Create new method for filling csv with a default value	BonfaceKilz
2022-03-12	Add methods for working with csv data	BonfaceKilz
2022-03-12	Append case attributes to csv data if they exist	BonfaceKilz
2022-03-11	Fix some linting issues	Frederick Muriuki Muriithi
2022-03-08	Remove unused function and its tests	Frederick Muriuki Muriithi
2022-03-08	Fix tests, and issues caught by tests	Frederick Muriuki Muriithi
2022-02-24	gn3: Explicitly specify UTF-8 to be the file encoding.	Arun Isaac
2022-02-21	Fix minor issues introduced while fixing linting errors	Frederick Muriuki Muriithi
2022-02-21	Fix a myriad of linter issues	Frederick Muriuki Muriithi
2022-02-21	Add test to ensure samples are read correctly from .geno files	Frederick Muriuki Muriithi
2022-02-18	Remove erroneous test based on wrong assumptions	Frederick Muriuki Muriithi
2022-02-17	Use pytest's "mark" feature to categorise tests	Frederick Muriuki Muriithi
2022-02-17	Add property tests for `dictify_by_samples`	Frederick Muriuki Muriithi
2022-02-09	Remove obsolete `PublishFreeze` table	Frederick Muriuki Muriithi
2022-01-05	test_traits.py: Update failing test	BonfaceKilz
2021-12-14	linting: Fix obvious linting issues	Frederick Muriuki Muriithi
2021-12-14	Provide expected values to use for tests	Frederick Muriuki Muriithi
2021-12-10	refactor sample r unittests	Alexander Kabui
2021-12-10	refactor unittest for normalizing sample values	Alexander Kabui
2021-11-29	Update test for data changes	Frederick Muriuki Muriithi