| Age | Commit message (Expand) | Author |
|---|---|---|
| 2021-03-08 | Delete "generate_gemma_computation_cmd" | BonfaceKilz |
| 2021-03-08 | Replace "compute_k_values" with "generate_gemma_cmd" | BonfaceKilz |
| 2021-03-08 | Add generic fn for computing k and gwa values | BonfaceKilz |
| 2021-03-08 | Apply pep-8 formatting...Began using elpy's format code fn | BonfaceKilz |
| 2021-03-08 | bug: Put a space between gemma-wrapper args | BonfaceKilz |
| 2021-03-08 | Delete "lookup_file" procedure | BonfaceKilz |
| 2021-03-08 | Extract files to "/TMPDIR/TOKEN"...TOKEN is the user token * gn3/file_utils.py (extract_uploaded_file): Add extra param "token". If a token is empty, create a new directory based off that token. * tests/unit/test_file_utils.py: Update failing tests. | BonfaceKilz |
| 2021-03-08 | Fix failing tests | BonfaceKilz |
| 2021-03-08 | Make the name of the redis job queue configurable | BonfaceKilz |
| 2021-02-24 | Create a new helper function for generating k_values and GWA | BonfaceKilz |
| 2021-02-24 | Add new procedure that computes the hash of an array of strings | BonfaceKilz |
| 2021-02-24 | Create a new method for generating a valid phenotype file on the fly | BonfaceKilz |
| 2021-02-24 | Update "compose_gemma_cmd" tests | BonfaceKilz |
| 2021-02-16 | Add procedure for uploading gzipped file...* gn3/file_utils.py (extract_uploaded_file): New procedure. * tests/unit/test_file_utils.py: Test cases for ^^. * tests/unit/upload-data.tar.gz: New test data. | BonfaceKilz |
| 2021-02-16 | Add extra option to set email when queueing CMD...The e-mail field will be used to send the results of the computation when it is completed. | BonfaceKilz |
| 2021-02-16 | Add new test cases for run_cmd | BonfaceKilz |
| 2021-02-12 | Use sorted list of files when calculating md5sums of directory...* gn3/file_utils.py (get_dir_hash): Sort list of files before calculating their md5sums. * tests/unit/test_file_utils.py (test_get_dir_hash): Update test-case md5sum. | BonfaceKilz |
| 2021-02-12 | Add new procedure for queueing a command...* gn3/commands.py (queue_cmd): New procedure. * tests/unit/test_commands.py: New test-cases for ^^. | BonfaceKilz |
| 2021-02-12 | Add new procedure for composing a gemma cmd...* gn3/commands.py: New file * tests/unit/test_commands.py: New test-cases for ^^. | BonfaceKilz |
| 2021-02-12 | Add new procedure to return a python dict from a json file...* gn3/file_utils.py (jsonfile_to_dict): New procedure * tests/unit/test_file_utils.py: New test-cases. | BonfaceKilz |
| 2021-02-12 | Add new procedure for looking up files in a given ENV variable...* gn3/file_utils.py (lookup_file): New function. * tests/unit/test_file_utils.py: New test cases for ^^. | BonfaceKilz |
| 2021-02-12 | Add function for computing the hash of a directory | BonfaceKilz |
 |
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| GeneNetwork3 REST API for data science and machine learning |
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