| Age | Commit message (Expand) | Author |
|---|
| 2022-06-21 | tests: test_file_utils: Replace pytest.mark.skip with unittest.skip•••"python setup.py test" won't skip "pytest.mark.skip" thereby leading to
build failure when you try to package gn3.
| BonfaceKilz |
| 2022-06-21 | test_file_utils: Disable test cases for "cache_ipfs_file"•••* tests/unit/test_file_utils.py (test_cache_ipfs_file_cache_hit): Skip
it.
(test_cache_ipfs_file_cache_miss): Ditto.
| BonfaceKilz |
| 2022-03-11 | Fix some linting issues | Frederick Muriuki Muriithi |
| 2022-02-21 | Fix a myriad of linter issues•••* Use `with` in place of plain `open`
* Use f-strings in place of `str.format()`
* Remove string interpolation from queries - provide data as query parameters
* other minor fixes
| Frederick Muriuki Muriithi |
| 2022-02-17 | Use pytest's "mark" feature to categorise tests•••Use pytest's `mark` feature to explicitly categorise the tests and run them
per category
| Frederick Muriuki Muriithi |
| 2021-05-13 | Rename file_utils to fs_helpers•••Generally avoid naming things with a "utils" prefix/ suffix since it
encourages contributors to dump any new functions there; and over time, as the
code grows, things get messy...
| BonfaceKilz |
| 2021-05-08 | Add extra genotype test file•••* tests/unit/test_data/genotype.txt: New file.
* tests/unit/test_file_utils.py: Update failing test.
| BonfaceKilz |
| 2021-03-23 | Convert Path object to a str•••* gn3/file_utils.py (cache_ipfs_file): Return a str instead of a path object.
* tests/unit/test_file_utils.py: Update failing tests.
| BonfaceKilz |
| 2021-03-23 | Add function to cache ipfs files | BonfaceKilz |
| 2021-03-23 | Apply autopep-8 | BonfaceKilz |
| 2021-03-10 | Apply yapf file formatting to file | BonfaceKilz |
| 2021-03-10 | Add extra tests for file utils•••In test server, files were not extracted properly. This test exposes the bug.
| BonfaceKilz |
| 2021-03-10 | Run yapf-formatter against file | BonfaceKilz |
| 2021-03-08 | Delete "lookup_file" procedure | BonfaceKilz |
| 2021-03-08 | Extract files to "/TMPDIR/TOKEN"•••TOKEN is the user token
* gn3/file_utils.py (extract_uploaded_file): Add extra param "token". If a
token is empty, create a new directory based off that token.
* tests/unit/test_file_utils.py: Update failing tests.
| BonfaceKilz |
| 2021-02-16 | Add procedure for uploading gzipped file•••* gn3/file_utils.py (extract_uploaded_file): New procedure.
* tests/unit/test_file_utils.py: Test cases for ^^.
* tests/unit/upload-data.tar.gz: New test data.
| BonfaceKilz |
| 2021-02-12 | Use sorted list of files when calculating md5sums of directory•••* gn3/file_utils.py (get_dir_hash): Sort list of files before
calculating their md5sums.
* tests/unit/test_file_utils.py (test_get_dir_hash): Update test-case
md5sum.
| BonfaceKilz |
| 2021-02-12 | Add new procedure to return a python dict from a json file•••* gn3/file_utils.py (jsonfile_to_dict): New procedure
* tests/unit/test_file_utils.py: New test-cases.
| BonfaceKilz |
| 2021-02-12 | Add new procedure for looking up files in a given ENV variable•••* gn3/file_utils.py (lookup_file): New function.
* tests/unit/test_file_utils.py: New test cases for ^^.
| BonfaceKilz |
| 2021-02-12 | Add function for computing the hash of a directory | BonfaceKilz |
