genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2023-04-06	Fix linting issues	Frederick Muriuki Muriithi

2023-04-06	Remove deprecated `gn3.db_utils.database_connector` function	Frederick Muriuki Muriithi
	Remove the deprecated function and fix a myriad of bugs that arise from removing the function. Issue: https://issues.genenetwork.org/issues/bugfix_coupling_current_app_and_db_utils
2023-03-23	tests: Set up fixture and mock out config variable	Frederick Muriuki Muriithi

2022-08-30	Update test: include port in parsed data from mysql uri	Frederick Muriuki Muriithi

2022-03-11	Fix some linting issues	Frederick Muriuki Muriithi

2022-03-08	Fix tests, and issues caught by tests	Frederick Muriuki Muriithi
	Fix some issues caught by tests due to changes introducing the hand-off of the partial correlations computations to an external process Fix some issues due to the changes that introduce context managers for database connections Update some tests to take the above two changes into consideration
2022-02-21	Fix a myriad of linter issues	Frederick Muriuki Muriithi
	* Use `with` in place of plain `open` * Use f-strings in place of `str.format()` * Remove string interpolation from queries - provide data as query parameters * other minor fixes
2022-02-17	Use pytest's "mark" feature to categorise tests	Frederick Muriuki Muriithi
	Use pytest's `mark` feature to explicitly categorise the tests and run them per category
2021-04-12	Integrate correlation API	Alexander Kabui
	- add new api for gn2-gn3 sample r integration - delete map for sample list to values - add db util file - add python msql-client dependency - add db for fetching lit correlation results - add unittests for db utils - add tests for db_utils - modify api for fetching lit correlation results - refactor Mock Database Connector and unittests - add sql url parser - add SQL URI env variable - refactor code for db utils - modify return data for lit correlation - refactor tissue correlation endpoint - replace db_instance with conn