genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2022-03-12	Fill in empty values in csv text with: "x"	BonfaceKilz
	* gn3/csvcmp.py (fill_csv): Update this function to allow empty lists to be filled with the default value(set in the args). * tests/unit/test_csvcmp.py (test_fill_csv): Update test to capture above.
2022-03-12	Extract a strain name given a csv string and it's header	BonfaceKilz
	* gn3/csvcmp.py (extract_strain_name): New function. * gn3/db/sample_data (delete_sample_data): Use the aforementioned function. (insert_sample_data): Ditto. * tests/unit/test_csvcmp: Test cases for above.
2022-03-12	Don't add extra key "Column" to dict if there are no changes	BonfaceKilz
	gn3/csvcmp.py (csv_diff): If the diff is empty, don't add an extra key "Column" to the dictionary. tests/unit/test_csvcmp (test_csv_diff_only_column_change): Add test-case for the above.
2022-03-12	Test edges cases for csv files when running csvdiff	BonfaceKilz
	* tests/unit/test_csvcmp.py (test_csv_diff): Delete it. (test_csv_diff_same_columns): Test csv_diff against csv texts with the same columns. (test_csv_diff_different_columns): Test csv texts against csv texts with different varying columns.
2022-03-12	Create new method for filling csv with a default value	BonfaceKilz
	* gn3/csvcmp.py (fill_csv): Given a csv text with uneven or incomplete fields whole length are less than width, fill them with a value which defaults to "x". * tests/unit/test_csvcmp.py (test_fill_csv): Test cases for the above.
2022-03-12	Add methods for working with csv data	BonfaceKilz
	gn3/csvcmp.py: New file (create_dirs_if_not_exists): From a list of dirs, create them if they don't exist. (remove_insignificant_edits): Given a dict with a "Modification" key, remove edits with "delta < ε". (csv_diff): Generate a csv_diff using the "csvdiff" tool packaged in guix. tests/unit/test_csvcmp.py: Add some tests for "gn3/csvcmp.py"