genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2022-05-27	Move sql for CRUD operations on case-attrs from gn2 to gn3	BonfaceKilz

2022-05-27	Return all the results from CaseAttributes column as is	BonfaceKilz
	* gn3/db/sample_data.py: Remove "collections" import. Add "Optional" import. (get_case_attributes): Return the results of "fetchall" from the case attributes. * tests/unit/db/test_sample_data.py (test_get_case_attributes): Update failing test.
2022-04-12	Test that a carriage return is removed when generating csv	BonfaceKilz
	* tests/unit/db/test_sample_data.py: import "get_trait_csv_sample_data". (test_get_trait_csv_sample_data): New test function.
2022-04-07	Use case attribute id inside brackets if present during insertions	BonfaceKilz
	* gn3/db/sample_data.py (delete_sample_data): If an id is present in the column header, use it. * tests/unit/db/test_sample_data.py (test_delete_sample_data): Update tests to capture the above.
2022-04-07	Use case attribute id inside brackets if present during insertions	BonfaceKilz
	* gn3/db/sample_data.py (insert_sample_data): If an id is present in the column header, use it. * tests/unit/db/test_sample_data.py (test_insert_sample_data): Update tests to capture the above.
2022-04-07	Use case attribute id inside brackets if present during updates	BonfaceKilz
	* gn3/db/sample_data.py: Import "parse_csv_column". (update_sample_data): If an id is present in the column header, use it. * tests/unit/db/test_sample_data.py (test_update_sample_data): Update tests to capture the above.
2022-04-07	Add method for fetching the case_attributes	BonfaceKilz
	* gn3/db/sample_data.py (get_case_attributes): New function. * tests/unit/db/test_sample_data.py (test_get_case_attributes): Test case for the above.
2022-04-01	Run python-black in file	BonfaceKilz
	* gn3/csvcmp.py: Run "black -l 79 ..." * tests/unit/db/test_sample_data.py: Ditto. * tests/unit/test_csvcmp.py: Ditto.
2022-03-12	Fix pylint errors in unit_tests	BonfaceKilz

2022-03-12	Append the strain name when extracting "actions"	BonfaceKilz
	* gn3/db/sample_data.py (__extract_actions): During updates, make sure that the strain name is part of the returned string when extracting "actions". * tests/unit/db/test_sample_data.py: Add test cases for the above.
2022-03-12	Apply auto-pep8 to sample_data.py and it's test file	BonfaceKilz

2022-03-12	Update how data is updated by re-using existing functions	BonfaceKilz
	* gn3/db/sample_data.py (get_sample_data_ids): Re-use "delete_sample_data" and "insert_sample_data" when updating data; and also add logic for updating modified data. * tests/unit/db/test_sample_data.py: Add tests for the above.
2022-03-12	Create action dict that's created when updating data	BonfaceKilz
	* gn3/db/sample_data.py (__extract_actions): An update on a vector of data can contain: inserts, deletes and updates. This functions extracts these actions during an update. * tests/unit/db/test_sample_data.py (test_extract_actions): Add test-case for the above.
2022-03-12	Add test cases for inserting and deleting data	BonfaceKilz
	* tests/unit/db/test_sample_data.py (test_insert_sample_data): Test inserting data. (test_delete_sample_data): Test deleting data.