Age | Commit message (Expand) | Author |
2021-11-01 | Retrieve indices of the selected samples | Frederick Muriuki Muriithi |
2021-10-29 | Feature/biweight reimplementation (#47) | Alexander Kabui |
2021-10-29 | Specify ten (10) decimal places | Frederick Muriuki Muriithi |
2021-10-29 | Fix some linting errors | Frederick Muriuki Muriithi |
2021-10-29 | Implement `tissue_correlation` function | Frederick Muriuki Muriithi |
2021-10-25 | fix unittests | Alexander Kabui |
2021-09-27 | modify unittests | Alexander Kabui |
2021-09-27 | add tests for calling wgcna_script | Alexander Kabui |
2021-09-27 | fix merge conflicts | Alexander Kabui |
2021-09-27 | Update terminology: `strain` to `sample` | Frederick Muriuki Muriithi |
2021-09-25 | minor fixes for unittests | Alexander Kabui |
2021-09-23 | Refactor: Move common sample data to separate file | Frederick Muriuki Muriithi |
2021-09-22 | add init tests for call to script | Alexander Kabui |
2021-09-17 | Fix a number of linting issues | Frederick Muriuki Muriithi |
2021-09-16 | pylint fixes | Alexander Kabui |
2021-09-16 | init tests for wgcna | Alexander Kabui |
2021-09-15 | initial test file for wgcna | Alexander Kabui |
2021-09-15 | Reorganise modules | Frederick Muriuki Muriithi |
2021-09-15 | Fix format of arguments and expected values | Frederick Muriuki Muriithi |
2021-09-08 | Ease search for traits and chromosomes | Muriithi Frederick Muriuki |
2021-09-08 | Fix the traits order computations for clustering | Muriithi Frederick Muriuki |
2021-09-06 | Provide function to organise parsed QTLReaper results | Muriithi Frederick Muriuki |
2021-09-06 | Leave "Chr" value as string when parsing | Muriithi Frederick Muriuki |
2021-08-31 | Fix linting errors, minor bugs and reorganise code | Muriithi Frederick Muriuki |
2021-08-31 | Fix test | Muriithi Frederick Muriuki |
2021-08-31 | Parse QTLReaper outputs | Muriithi Frederick Muriuki |
2021-08-20 | Merge branch 'main' of github.com:genenetwork/genenetwork3 into heatmap_gener... | Muriithi Frederick Muriuki |
2021-08-20 | Retrieve the strains with valid values | Muriithi Frederick Muriuki |
2021-08-20 | Add tests for ordering and implement function | Muriithi Frederick Muriuki |
2021-08-20 | Minor correlation fixes (#36) | Alexander Kabui |
2021-08-18 | Test the clustering | Muriithi Frederick Muriuki |
2021-08-18 | Add tests and fix errors caught with tests | Muriithi Frederick Muriuki |
2021-08-17 | Test the clustering | Muriithi Frederick Muriuki |
2021-08-17 | Add tests and fix errors caught with tests | Muriithi Frederick Muriuki |
2021-08-11 | use normal function for correlation (#34) | Alexander Kabui |
2021-07-26 | Fix issues caught by pylint | Muriithi Frederick Muriuki |
2021-07-23 | Add data examples for `slink`. Implement function. | Muriithi Frederick Muriuki |
2021-07-23 | Add more test data | Muriithi Frederick Muriuki |
2021-07-23 | Fix issue caught in `nearest` while testing `slink` | Muriithi Frederick Muriuki |
2021-07-23 | New function (`slink`): return [] on exception | Muriithi Frederick Muriuki |
2021-07-22 | Get shortest distance from two lists/tuples of member coordinates | Muriithi Frederick Muriuki |
2021-07-22 | Test for shortest distance between members in a list and coordinate | Muriithi Frederick Muriuki |
2021-07-22 | Check that given list and both coordinates, we get shortest distance | Muriithi Frederick Muriuki |
2021-07-22 | Check that all distances are positive or zero | Muriithi Frederick Muriuki |
2021-07-22 | Check that distance from A to B is same as from B to A | Muriithi Frederick Muriuki |
2021-07-22 | Check that child distance from itself is zero | Muriithi Frederick Muriuki |
2021-07-21 | Extract tests from code in GN1 | Muriithi Frederick Muriuki |
2021-07-20 | Add test for code to move over from GN1 | Muriithi Frederick Muriuki |
2021-06-29 | Add a diffing function | BonfaceKilz |
2021-06-20 | merge main | Alexander Kabui |