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AgeCommit message (Expand)Author
2021-11-09Update test data: have both vectors and matricesFrederick Muriuki Muriithi
2021-11-04Partially implement `partial_correlation_recursive`Frederick Muriuki Muriithi
2021-11-04Implement `build_data_frame`Frederick Muriuki Muriithi
2021-11-04Create blackbox tests for some functions migrated from RFrederick Muriuki Muriithi
2021-11-01Merge branch 'main' of github.com:genenetwork/genenetwork3 into partial-corre...Frederick Muriuki Muriithi
2021-11-01Retrieve indices of the selected samplesFrederick Muriuki Muriithi
2021-10-29Feature/biweight reimplementation (#47)Alexander Kabui
2021-10-29Specify ten (10) decimal placesFrederick Muriuki Muriithi
2021-10-29Fix some linting errorsFrederick Muriuki Muriithi
2021-10-29Implement `tissue_correlation` functionFrederick Muriuki Muriithi
2021-10-25fix unittestsAlexander Kabui
2021-09-27modify unittestsAlexander Kabui
2021-09-27add tests for calling wgcna_scriptAlexander Kabui
2021-09-27fix merge conflictsAlexander Kabui
2021-09-27Update terminology: `strain` to `sample`Frederick Muriuki Muriithi
2021-09-25minor fixes for unittestsAlexander Kabui
2021-09-23Refactor: Move common sample data to separate fileFrederick Muriuki Muriithi
2021-09-22add init tests for call to scriptAlexander Kabui
2021-09-17Fix a number of linting issuesFrederick Muriuki Muriithi
2021-09-16pylint fixesAlexander Kabui
2021-09-16init tests for wgcnaAlexander Kabui
2021-09-15initial test file for wgcnaAlexander Kabui
2021-09-15Reorganise modulesFrederick Muriuki Muriithi
2021-09-15Fix format of arguments and expected valuesFrederick Muriuki Muriithi
2021-09-08Ease search for traits and chromosomesMuriithi Frederick Muriuki
2021-09-08Fix the traits order computations for clusteringMuriithi Frederick Muriuki
2021-09-06Provide function to organise parsed QTLReaper resultsMuriithi Frederick Muriuki
2021-09-06Leave "Chr" value as string when parsingMuriithi Frederick Muriuki
2021-08-31Fix linting errors, minor bugs and reorganise codeMuriithi Frederick Muriuki
2021-08-31Fix testMuriithi Frederick Muriuki
2021-08-31Parse QTLReaper outputsMuriithi Frederick Muriuki
2021-08-20Merge branch 'main' of github.com:genenetwork/genenetwork3 into heatmap_gener...Muriithi Frederick Muriuki
2021-08-20Retrieve the strains with valid valuesMuriithi Frederick Muriuki
2021-08-20Add tests for ordering and implement functionMuriithi Frederick Muriuki
2021-08-20Minor correlation fixes (#36)Alexander Kabui
2021-08-18Test the clusteringMuriithi Frederick Muriuki
2021-08-18Add tests and fix errors caught with testsMuriithi Frederick Muriuki
2021-08-17Test the clusteringMuriithi Frederick Muriuki
2021-08-17Add tests and fix errors caught with testsMuriithi Frederick Muriuki
2021-08-11use normal function for correlation (#34)Alexander Kabui
2021-07-26Fix issues caught by pylintMuriithi Frederick Muriuki
2021-07-23Add data examples for `slink`. Implement function.Muriithi Frederick Muriuki
2021-07-23Add more test dataMuriithi Frederick Muriuki
2021-07-23Fix issue caught in `nearest` while testing `slink`Muriithi Frederick Muriuki
2021-07-23New function (`slink`): return [] on exceptionMuriithi Frederick Muriuki
2021-07-22Get shortest distance from two lists/tuples of member coordinatesMuriithi Frederick Muriuki
2021-07-22Test for shortest distance between members in a list and coordinateMuriithi Frederick Muriuki
2021-07-22Check that given list and both coordinates, we get shortest distanceMuriithi Frederick Muriuki
2021-07-22Check that all distances are positive or zeroMuriithi Frederick Muriuki
2021-07-22Check that distance from A to B is same as from B to AMuriithi Frederick Muriuki
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