| Age | Commit message (Expand) | Author |
|---|
| 2021-04-12 | Integrate correlation API...- add new api for gn2-gn3 sample r integration
- delete map for sample list to values
- add db util file
- add python msql-client dependency
- add db for fetching lit correlation results
- add unittests for db utils
- add tests for db_utils
- modify api for fetching lit correlation results
- refactor Mock Database Connector and unittests
- add sql url parser
- add SQL URI env variable
- refactor code for db utils
- modify return data for lit correlation
- refactor tissue correlation endpoint
- replace db_instance with conn | Alexander Kabui |
| 2021-03-16 | Refactor/clean up correlations (#4)...* initial commit for Refactor/clean-up-correlation
* add python scipy dependency
* initial commit for sample correlation
* initial commit for sample correlation endpoint
* initial commit for integration and unittest
* initial commit for registering correlation blueprint
* add and modify unittest and integration tests for correlation
* Add compute compute_all_sample_corr method for correlation
* add scipy to requirement txt file
* add tissue correlation for trait list
* add unittest for tissue correlation
* add lit correlation for trait list
* add unittests for lit correlation for trait list
* modify lit correlarion for trait list
* add unittests for lit correlation for trait list
* add correlation metho in dynamic url
* add file format for expected structure input while doing sample correlation
* modify input data structure -> add trait id
* update tests for sample r correlation
* add compute all lit correlation method
* add endpoint for computing lit_corr
* add unit and integration tests for computing lit corr
* add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation
* add unittest and integration tests for tissue correlation
Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com> | Alexander Kabui |
| 2021-03-10 | Fix k-compute command when "loco" is true | BonfaceKilz |
| 2021-03-08 | Delete "generate_gemma_computation_cmd" | BonfaceKilz |
| 2021-03-08 | Replace "compute_k_values" with "generate_gemma_cmd" | BonfaceKilz |
| 2021-03-08 | Add generic fn for computing k and gwa values | BonfaceKilz |
| 2021-03-08 | Apply pep-8 formatting...Began using elpy's format code fn
| BonfaceKilz |
| 2021-03-08 | Fix failing tests | BonfaceKilz |
| 2021-02-24 | Create a new helper function for generating k_values and GWA | BonfaceKilz |
| 2021-02-24 | Add new procedure that computes the hash of an array of strings | BonfaceKilz |
| 2021-02-24 | Create a new method for generating a valid phenotype file on the fly | BonfaceKilz |
