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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
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migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
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GeneNetwork3 REST API for data science and machine learning
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test_gemma.py
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Author
2021-03-23
Use ipfs to get genotype files
BonfaceKilz
2021-03-10
Add missing "/" in URL in docstring
BonfaceKilz
2021-03-10
Rename "covariates" to "covars" in endpoints for consistency
BonfaceKilz
2021-03-10
Fix k-compute command when "loco" is true
BonfaceKilz
2021-03-08
Remove "/k-gwa-computation"
BonfaceKilz
2021-03-08
Add "/k-gwa-compute/covars/loco/<chromosomes>/maf/<maf>/<token>"
...
Reviewed-by: BonfaceKilz <me@bonfacemunyoki.com>
BonfaceKilz
2021-03-08
Add "/gemma/k-gwa-compute/loco/<chromosomes>/maf/<maf>/<token>"
BonfaceKilz
2021-03-08
Add "/k-gwa-compute/covars/<token>"
BonfaceKilz
2021-03-08
Add "/gemma/k-gwa-compute/<token>"
BonfaceKilz
2021-03-08
Replace "compute_k_values" with "generate_gemma_cmd"
BonfaceKilz
2021-03-08
Add generic fn for computing k and gwa values
BonfaceKilz
2021-03-08
Apply pep-8 formatting
...
Began using elpy's format code fn
BonfaceKilz
2021-03-08
Add new endpoint
...
"/gwa-compute/<k_filename>/loco/covariates/maf/<maf>/<token>"
BonfaceKilz
2021-03-08
Replace "generate_gemma_computation_cmd" with "compose_gemma_cmd"
BonfaceKilz
2021-03-08
Add new endpoint: "/gwa-compute/<k_filename>/loco/maf/<maf>/<token>"
BonfaceKilz
2021-03-08
Add new endpoint: "/gwa-compute/covars/<k_filename>/<token>"
BonfaceKilz
2021-03-08
Add new endpoint: "/gwa-compute/<k_filename>/<token>"
BonfaceKilz
2021-03-08
Add new endpoint: "/gemma/k-compute/loco/<chromosomes>/<token>"
BonfaceKilz
2021-03-08
Prepend all endpoints with "api"
BonfaceKilz
2021-03-08
Add new endpoint: "/gemma/k-compute/<token>"
...
* gn3/api/gemma.py (compute_k): New function. * tests/integration/test_gemma.py (tesk_k_compute): New test case.
BonfaceKilz
2021-03-08
Replace APP_DEFAULTS dict with actual conf params
BonfaceKilz
2021-03-08
Update failing tests.
BonfaceKilz
2021-03-08
Fix failing tests
BonfaceKilz
2021-03-08
Add extra endpoint for checking the status of a command
BonfaceKilz
2021-03-08
Make the name of the redis job queue configurable
BonfaceKilz
2021-02-24
Rename "/gemma/run" to "/gemma/k-gwa-computation"
BonfaceKilz
2021-02-24
Add tests for "/gemma/run" endpoint
BonfaceKilz
2021-02-24
Add integration test for "/gemma/version" endpoint
BonfaceKilz
2021-02-16
Add basic integration tests to test out the API
BonfaceKilz