genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2024-10-02	feat: cleaner handling of virtuoso process	John Nduli

2024-10-02	Fix typo in comments.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-10-02	Spin up a local virtuoso instance to run RDF tests against.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-10-02	Add virtuoso ini file to be used during testing.	Munyoki Kilyungi
	tests/fixtures/virtuoso.py: New file. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-10-02	Set a default password for sparql.	Munyoki Kilyungi
	* tests/fixtures/rdf.py: Import config. (get_sparql_auth_conf): Load GN3 config from GN3_SECRETS and GN3_CONF if the respective envs are set. Set sane defaults for sparql_conf. (rdf_setup): Remove "fxtr_app_config". * tests/unit/db/rdf/test_wiki.py (test_get_wiki_entries_by_symbol): Ditto. (test_get_comment_history): Ditto. (test_update_wiki_comment): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-09-28	Lint: fix some linting errors.	Frederick Muriuki Muriithi

2024-09-27	Use existing fixture to retrieve settings.	Frederick Muriuki Muriithi

2024-09-23	Handle missing GN3_SECRETS for CI testing.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-09-23	Fix or ignore pylint errors.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-09-23	Load GN3_SECRETS after loading GN3_CONF settings.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-09-23	Make sure the the test graph is empty before running rdf tests.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-09-23	Use test fixtures to set-up a test named graph.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>