aboutsummaryrefslogtreecommitdiff
path: root/scripts
AgeCommit message (Expand)Author
2022-06-20Restrict partial correlation method choicesFrederick Muriuki Muriithi
2022-05-24Run partial correlations with external scriptFrederick Muriuki Muriithi
2022-05-24New script to compute partial correlationsFrederick Muriuki Muriithi
2022-05-05Extract common error checking. Rename function.Frederick Muriuki Muriithi
2022-03-22Merge branch 'feature/add_rqtl_pairscan' of https://github.com/zsloan/genenet...zsloan
2022-03-22Change order of if statements for running genoprob commandzsloan
2022-03-22Updated rqtl_wrapper to also return a map file when doing a pair-scan (since ...zsloan
2022-03-22Added line priting pair-scan results to CSV and changed the default step-size...zsloan
2022-03-22- Added scan_func function that determines whether scanone or scantwozsloan
2022-03-22Added option for running pairscan to rqtl_wrapper.Rzsloan
2022-03-08Create database connections within context managersFrederick Muriuki Muriithi
2022-03-03Run partial correlations in an external processFrederick Muriuki Muriithi
2022-02-11Quote shell variables to prevent globbingFrederick Muriuki Muriithi
2022-02-02Fix R/qtl covar bugzsloan
2022-02-02remove commentsAlexander Kabui
2022-02-02match case string input to booleanAlexander Kabui
2022-02-02fix for parametric inputAlexander Kabui
2022-02-02use user input significanceAlexander Kabui
2022-02-02new line fixAlexander Kabui
2022-02-02add new json outputAlexander Kabui
2022-01-22minor refactoringAlexander Kabui
2022-01-22function override:fix target specific output file for networkAlexander Kabui
2022-01-22generate networkAlexander Kabui
2022-01-22generate ctl plots for each traitAlexander Kabui
2022-01-22fixes for ctl script:generate ctl ctl_significant jsonAlexander Kabui
2022-01-22bugfixes for script;create pheno and geno objectsAlexander Kabui
2022-01-22generate lineplotAlexander Kabui
2022-01-22minor fix:read input data from json fileAlexander Kabui
2022-01-22export json dataAlexander Kabui
2022-01-22get significant interactionsAlexander Kabui
2022-01-22perform the ctl scanAlexander Kabui
2022-01-22fetch genotypes and phenotype filesAlexander Kabui
2022-01-22init script ctl analysisAlexander Kabui
2021-12-22Refactor wgcna (#63)Alexander Kabui
2021-11-11Merge branch 'main' into feature/add_rqtl_pairscanzsloan
2021-10-29Feature/biweight reimplementation (#47)Alexander Kabui
2021-10-25minor fixes for sript enable annotationsAlexander Kabui
2021-10-25script modification : add debug statementsAlexander Kabui
2021-10-14Fixed when model is set to account for situations with no covariateszsloan
2021-10-14Incorporated Danny's code for calculating QTL main effects into rqtl_wrapper.Rzsloan
2021-10-12Merge branch 'main' of https://github.com/genenetwork/genenetwork3 into bug/f...zsloan
2021-10-12Merge branch 'main' of https://github.com/genenetwork/genenetwork3 into featu...zsloan
2021-09-27remove unnecessary comments and variablesAlexander Kabui
2021-09-23Updated rqtl_wrapper to also return a map file when doing a pair-scan (since ...zsloan
2021-09-23Added line priting pair-scan results to CSV and changed the default step-size...zsloan
2021-09-23- Added scan_func function that determines whether scanone or scantwozsloan
2021-09-23Added option for running pairscan to rqtl_wrapper.Rzsloan
2021-09-23Fix covariates as described by Dannyzsloan
2021-09-23add traits as columns names and pass as json inputAlexander Kabui
2021-09-23check for na powerEst and use a default valueAlexander Kabui
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-29 03:05:09 +0000