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AgeCommit message (Expand)Author
2022-01-22minor refactoringAlexander Kabui
2022-01-22function override:fix target specific output file for networkAlexander Kabui
2022-01-22generate networkAlexander Kabui
2022-01-22generate ctl plots for each traitAlexander Kabui
2022-01-22fixes for ctl script:generate ctl ctl_significant jsonAlexander Kabui
2022-01-22bugfixes for script;create pheno and geno objectsAlexander Kabui
2022-01-22generate lineplotAlexander Kabui
2022-01-22minor fix:read input data from json fileAlexander Kabui
2022-01-22export json dataAlexander Kabui
2022-01-22get significant interactionsAlexander Kabui
2022-01-22perform the ctl scanAlexander Kabui
2022-01-22fetch genotypes and phenotype filesAlexander Kabui
2022-01-22init script ctl analysisAlexander Kabui
2021-12-22Refactor wgcna (#63)Alexander Kabui
2021-11-11Merge branch 'main' into feature/add_rqtl_pairscanzsloan
2021-10-29Feature/biweight reimplementation (#47)Alexander Kabui
2021-10-25minor fixes for sript enable annotationsAlexander Kabui
2021-10-25script modification : add debug statementsAlexander Kabui
2021-10-14Fixed when model is set to account for situations with no covariateszsloan
2021-10-14Incorporated Danny's code for calculating QTL main effects into rqtl_wrapper.Rzsloan
2021-10-12Merge branch 'main' of https://github.com/genenetwork/genenetwork3 into bug/f...zsloan
2021-10-12Merge branch 'main' of https://github.com/genenetwork/genenetwork3 into featu...zsloan
2021-09-27remove unnecessary comments and variablesAlexander Kabui
2021-09-23Updated rqtl_wrapper to also return a map file when doing a pair-scan (since ...zsloan
2021-09-23Added line priting pair-scan results to CSV and changed the default step-size...zsloan
2021-09-23- Added scan_func function that determines whether scanone or scantwozsloan
2021-09-23Added option for running pairscan to rqtl_wrapper.Rzsloan
2021-09-23Fix covariates as described by Dannyzsloan
2021-09-23add traits as columns names and pass as json inputAlexander Kabui
2021-09-23check for na powerEst and use a default valueAlexander Kabui
2021-09-23append input to outputAlexander Kabui
2021-09-23sample output dataAlexander Kabui
2021-09-23validate required outputAlexander Kabui
2021-09-23add mock test data for scriptAlexander Kabui
2021-09-23pass json file path as an argAlexander Kabui
2021-09-23pass other variables from user input for network constrAlexander Kabui
2021-09-23load data from json file and and convert to dtAlexander Kabui
2021-09-15minor fixesAlexander Kabui
2021-09-15rename variables && delete debugsAlexander Kabui
2021-09-15Fetch IMAGE_DIR env and add img locationAlexander Kabui
2021-09-14remove debug statementsAlexander Kabui
2021-09-14function to generate rand str for imageAlexander Kabui
2021-09-14plot plotDendroAndColors and generate pngAlexander Kabui
2021-09-14construct gene co-expression network & module detectionAlexander Kabui
2021-09-14compute the softthreshholdAlexander Kabui
2021-09-14Checking data for excessive missing valuesAlexander Kabui
2021-09-14load the required data for analysisAlexander Kabui
2021-09-14init commit for wgcna scriptAlexander Kabui
2021-08-28Fix issue that caused R/qtl to not use the first covariate when using stratif...zsloan
2021-08-26Added # permutations to verbose printzsloan
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