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2021-09-23Updated rqtl_wrapper to also return a map file when doing a pair-scan (since ↵zsloan
we need the list of markers/pseudomarkers and their positions)
2021-09-23Added line priting pair-scan results to CSV and changed the default ↵zsloan
step-size to 10cM for pair-scan
2021-09-23- Added scan_func function that determines whether scanone or scantwozsloan
(pairscan) is used - For pairscan default to using step 20 (subject to change, but some step is required during calc.genoprob to make it run fast enough) - Added some new verbose prints
2021-09-23Added option for running pairscan to rqtl_wrapper.Rzsloan
2021-08-28Fix issue that caused R/qtl to not use the first covariate when using ↵zsloan
stratified permutations + covariates
2021-08-26Added # permutations to verbose printzsloan
2021-06-23minor fixes for biweight scriptAlexander Kabui
2021-06-22scripts: laminar: Add json with hooks for running a linterBonfaceKilz
2021-06-22scripts: laminar: Add sh scripts for CIBonfaceKilz
2021-06-20merge mainAlexander Kabui
2021-06-20make requested changes to biweightAlexander Kabui
2021-06-18Added option for enabling permutation stratazsloan
Fixed issue where covariates with numerical names were being ignored Fixed issue where the hash filename wasn't being used for the permutation output
2021-06-18Add rqtl_wrapper.R script and necessary imports to guix.scmzsloan