index
:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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2022-02-02
fix for parametric input
Alexander Kabui
2022-02-02
use user input significance
Alexander Kabui
2022-02-02
new line fix
Alexander Kabui
2022-02-02
add new json output
Alexander Kabui
2022-01-22
minor refactoring
Alexander Kabui
2022-01-22
function override:fix target specific output file for network
Alexander Kabui
2022-01-22
generate network
Alexander Kabui
2022-01-22
generate ctl plots for each trait
Alexander Kabui
2022-01-22
fixes for ctl script:generate ctl ctl_significant json
Alexander Kabui
2022-01-22
bugfixes for script;create pheno and geno objects
Alexander Kabui
2022-01-22
generate lineplot
Alexander Kabui
2022-01-22
minor fix:read input data from json file
Alexander Kabui
2022-01-22
export json data
Alexander Kabui
2022-01-22
get significant interactions
Alexander Kabui
2022-01-22
perform the ctl scan
Alexander Kabui
2022-01-22
fetch genotypes and phenotype files
Alexander Kabui
2022-01-22
init script ctl analysis
Alexander Kabui
2021-12-22
Refactor wgcna (#63)
...
* add r as a gn3 input * calculate powers from user input * fix merge conflict
Alexander Kabui
2021-10-29
Feature/biweight reimplementation (#47)
...
* add biweight reimplementation with pingouin * delete biweight scripts and tests * add python-pingouin to guix file * delete biweight paths * mypy fix:pingouin mising imports * pep8 formatting && pylint fixes
Alexander Kabui
2021-10-25
minor fixes for sript enable annotations
Alexander Kabui
2021-10-25
script modification : add debug statements
Alexander Kabui
2021-10-14
Fixed when model is set to account for situations with no covariates
zsloan
2021-10-14
Incorporated Danny's code for calculating QTL main effects into rqtl_wrapper.R
zsloan
2021-10-12
Merge branch 'main' of https://github.com/genenetwork/genenetwork3 into bug/f...
zsloan
2021-09-27
remove unnecessary comments and variables
Alexander Kabui
2021-09-23
Fix covariates as described by Danny
zsloan
2021-09-23
add traits as columns names and pass as json input
Alexander Kabui
2021-09-23
check for na powerEst and use a default value
Alexander Kabui
2021-09-23
append input to output
Alexander Kabui
2021-09-23
sample output data
Alexander Kabui
2021-09-23
validate required output
Alexander Kabui
2021-09-23
add mock test data for script
Alexander Kabui
2021-09-23
pass json file path as an arg
Alexander Kabui
2021-09-23
pass other variables from user input for network constr
Alexander Kabui
2021-09-23
load data from json file and and convert to dt
Alexander Kabui
2021-09-15
minor fixes
Alexander Kabui
2021-09-15
rename variables && delete debugs
Alexander Kabui
2021-09-15
Fetch IMAGE_DIR env and add img location
Alexander Kabui
2021-09-14
remove debug statements
Alexander Kabui
2021-09-14
function to generate rand str for image
Alexander Kabui
2021-09-14
plot plotDendroAndColors and generate png
Alexander Kabui
2021-09-14
construct gene co-expression network & module detection
Alexander Kabui
2021-09-14
compute the softthreshhold
Alexander Kabui
2021-09-14
Checking data for excessive missing values
Alexander Kabui
2021-09-14
load the required data for analysis
Alexander Kabui
2021-09-14
init commit for wgcna script
Alexander Kabui
2021-08-28
Fix issue that caused R/qtl to not use the first covariate when using stratif...
zsloan
2021-08-26
Added # permutations to verbose print
zsloan
2021-06-23
minor fixes for biweight script
Alexander Kabui
2021-06-22
scripts: laminar: Add json with hooks for running a linter
BonfaceKilz
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