index
:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
path:
root
/
scripts
/
rqtl_wrapper.R
Age
Commit message (
Expand
)
Author
2021-11-11
Merge branch 'main' into feature/add_rqtl_pairscan
zsloan
2021-10-14
Fixed when model is set to account for situations with no covariates
zsloan
2021-10-14
Incorporated Danny's code for calculating QTL main effects into rqtl_wrapper.R
zsloan
2021-09-23
Updated rqtl_wrapper to also return a map file when doing a pair-scan (since ...
zsloan
2021-09-23
Added line priting pair-scan results to CSV and changed the default step-size...
zsloan
2021-09-23
- Added scan_func function that determines whether scanone or scantwo
...
(pairscan) is used - For pairscan default to using step 20 (subject to change, but some step is required during calc.genoprob to make it run fast enough) - Added some new verbose prints
zsloan
2021-09-23
Added option for running pairscan to rqtl_wrapper.R
zsloan
2021-09-23
Fix covariates as described by Danny
zsloan
2021-08-28
Fix issue that caused R/qtl to not use the first covariate when using stratif...
zsloan
2021-08-26
Added # permutations to verbose print
zsloan
2021-06-18
Added option for enabling permutation strata
...
Fixed issue where covariates with numerical names were being ignored Fixed issue where the hash filename wasn't being used for the permutation output
zsloan
2021-06-18
Add rqtl_wrapper.R script and necessary imports to guix.scm
zsloan