genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2022-03-22	Added line priting pair-scan results to CSV and changed the default ↵	zsloan
	step-size to 10cM for pair-scan
2022-03-22	- Added scan_func function that determines whether scanone or scantwo	zsloan
	(pairscan) is used - For pairscan default to using step 20 (subject to change, but some step is required during calc.genoprob to make it run fast enough) - Added some new verbose prints
2022-03-22	Added option for running pairscan to rqtl_wrapper.R	zsloan

2022-02-02	Fix R/qtl covar bug	zsloan
	The rqtl_wrapper script was throwing an error when only a single categorical covariate was used. This is apparently because "covars[,name]" throws an error in such a situation. Using just "covars" in such a situation prevents the error. So I just added an if statement checking the number of covariates. There might be some better way to deal with this in R, but this is the best I could come up with.
2021-10-14	Fixed when model is set to account for situations with no covariates	zsloan

2021-10-14	Incorporated Danny's code for calculating QTL main effects into rqtl_wrapper.R	zsloan

2021-09-23	Fix covariates as described by Danny	zsloan

2021-08-28	Fix issue that caused R/qtl to not use the first covariate when using ↵	zsloan
	stratified permutations + covariates
2021-08-26	Added # permutations to verbose print	zsloan

2021-06-18	Added option for enabling permutation strata	zsloan
	Fixed issue where covariates with numerical names were being ignored Fixed issue where the hash filename wasn't being used for the permutation output
2021-06-18	Add rqtl_wrapper.R script and necessary imports to guix.scm	zsloan