genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2025-07-16	Set a larger map size for the larger genotype files.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-16	Add functionality for importing one entire genotype directory.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-16	More efficiently and correctly count nrows is genotype.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-16	Delete un-used import.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-16	Add module doc-string.	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-16	Improve genotype file parsing.	Munyoki Kilyungi
	* scripts/lmdb_matrix.py (GenotypeMatrix): Delete transpose. Add "file_info" field. (save_excursion, count_lines): Delete. (get_genotype_dimensions, read_genotype_headers): New function. (read_geno_file): Rename this to... (read_genotype_file): ... this. (genotype_db_put): Put "file_info". (genotype_db_get): Fetch "file_info". (import_genotype): Use read_genotype_file. (print_current_matrix): Remove transpose. Print out file_info metadata. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-16	Simplify genotype db script.	Munyoki Kilyungi
	Hashing and versioning made the script very slow. Now, this script can handle much larger data. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-16	Add genotype matrix script.	Munyoki Kilyungi
	* scripts/lmdb_matrix.py: New file. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>