genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2021-12-14	mypy: ignore some imports and errors	Frederick Muriuki Muriithi
	* Ignore some missing library stubs * Ignore some typing errors * Fix obvious typing errors
2021-11-01	Fix mypy issues	BonfaceKilz

2021-10-29	Feature/biweight reimplementation (#47)	Alexander Kabui
	* add biweight reimplementation with pingouin * delete biweight scripts and tests * add python-pingouin to guix file * delete biweight paths * mypy fix:pingouin mising imports * pep8 formatting && pylint fixes
2021-06-18	add ignore_missing_imports for numpy in mypy.ini since it complains about ↵	zsloan
	that and we seem to have done the same thing for scipy
2021-05-08	Ignore missing stub imports from MySQLdb	BonfaceKilz

2021-03-23	Re-add mypy conf file	BonfaceKilz
	Deleted in 56ce88a
2021-03-16	delete unwanted correlation stuff (#5)	Alexander Kabui
	* delete unwanted correlation stuff * Refactor/clean up correlations (#4) * initial commit for Refactor/clean-up-correlation * add python scipy dependency * initial commit for sample correlation * initial commit for sample correlation endpoint * initial commit for integration and unittest * initial commit for registering correlation blueprint * add and modify unittest and integration tests for correlation * Add compute compute_all_sample_corr method for correlation * add scipy to requirement txt file * add tissue correlation for trait list * add unittest for tissue correlation * add lit correlation for trait list * add unittests for lit correlation for trait list * modify lit correlarion for trait list * add unittests for lit correlation for trait list * add correlation metho in dynamic url * add file format for expected structure input while doing sample correlation * modify input data structure -> add trait id * update tests for sample r correlation * add compute all lit correlation method * add endpoint for computing lit_corr * add unit and integration tests for computing lit corr * add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation * add unittest and integration tests for tissue correlation Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com> * update guix scm file * fix pylint error for correlations api Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>
2021-03-15	Add a basic mypy init file	BonfaceKilz