index
:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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2024-04-30
Add command function that returns an Either monad.
Munyoki Kilyungi
2024-04-29
Prevent error when group isn't in parents/f1s JSON file
zsloan
2024-04-15
Delete unused imports.
Munyoki Kilyungi
2024-04-11
Include parents/f1s in default samplelist + add boolean options for them
zsloan
2024-04-04
Rephrase user feedback for Fahamu API in case it takes too long to respond.
Alexander_Kabui
2024-03-26
add sqlite-db-path config
Alexander_Kabui
2024-03-26
fetch pubmed file from /gn-meta/lit
Alexander_Kabui
2024-03-25
pep8 formatting
Alexander_Kabui
2024-03-25
save db data on SQLITE_PATH file path
Alexander_Kabui
2024-03-25
fix user_id type
Alexander_Kabui
2024-03-25
enable logigng info for api <rating>
Alexander_Kabui
2024-03-25
match user id to type str
Alexander_Kabui
2024-03-25
pep8 formatting
Alexander_Kabui
2024-03-25
fetch tmpdir from current app connfig
Alexander_Kabui
2024-03-25
fix db path issue for lllm
Alexander_Kabui
2024-03-25
use data dir for files
Alexander_Kabui
2024-03-22
use tmp for test db
Alexander_Kabui
2024-03-22
dump gnqa rating data to db
Alexander_Kabui
2024-03-22
add gnqa db path
Alexander_Kabui
2024-03-18
delete test file
Alexander_Kabui
2024-03-18
fetch pubmed data from tmpdir
Alexander_Kabui
2024-03-15
add pubmed metadata
Alexander_Kabui
2024-03-15
add error handling for invalid tokens
Alexander_Kabui
2024-03-15
Remove ALL html templates from GeneNetwork3
Frederick Muriuki Muriithi
2024-03-04
Check for exception args and provide traceback.
Frederick Muriuki Muriithi
2024-03-04
Handle generic exceptions gracefully.
Frederick Muriuki Muriithi
2024-02-25
Disable too-many-arguments for "run_reaper".
Munyoki Kilyungi
2024-02-25
Fix line-too-long error.
Munyoki Kilyungi
2024-02-25
Correctly handle URLError.
Munyoki Kilyungi
2024-02-25
Construct genofile_path using pathlib module.
Munyoki Kilyungi
2024-02-19
Pass qtlreaper command path as argument to run_reaper
zsloan
2024-02-15
Use correct names for dataset entries in json result.
Munyoki Kilyungi
2024-02-14
Delete type hints from handle_sparql_errors.
Munyoki Kilyungi
2024-02-14
Delete trailing space.
Munyoki Kilyungi
2024-02-14
Remove try ... except clauses around RDF endpoints.
Munyoki Kilyungi
2024-02-14
Minor pep-8 fixes.
Munyoki Kilyungi
2024-02-14
Handle sparql errors at the app level.
Munyoki Kilyungi
2024-02-14
raise error for fahamu api 0 task_id
Alexander_Kabui
2024-02-14
Stem the dataset's id before constructing the path.
Munyoki Kilyungi
2024-02-13
Use correct path for dataset metadata files.
Munyoki Kilyungi
2024-02-13
Fetch extra metadata from text-files when fetching datasets.
Munyoki Kilyungi
2024-02-13
Update "dataset/<name>" API endpoint to fetch metadata from files.
Munyoki Kilyungi
2024-02-13
Retrieve metadata from text files given a path.
Munyoki Kilyungi
2024-02-12
pep8 formatting
Alexander_Kabui
2024-01-30
Add the traceback to the exceptions for display.
Frederick Muriuki Muriithi
2024-01-26
centralize common errors
Alexander_Kabui
2024-01-26
Feature/gn llm caching (#148)
Alexander Kabui
2024-01-17
fix error message for empty responses
Alexander_Kabui
2024-01-17
Adjust retry parameters and response handling in custom_request
Alexander_Kabui
2024-01-17
Increase timeout to 30s to fix 'Read timed out issue
Alexander_Kabui
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