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genenetwork3
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auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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2025-04-24
Add "**kwargs" to delete_wiki to make @require_token to work.
Munyoki Kilyungi
2025-04-24
Remove early return in delete_wiki to complete query execution.
Munyoki Kilyungi
2025-04-22
Fix pylint errors.
Munyoki Kilyungi
2025-04-22
Implement delete_wiki API endpoint.
Munyoki Kilyungi
2025-04-22
Add function to delete wiki entries by wiki_id.
Munyoki Kilyungi
2025-04-22
Correctly ignore broad-expection-raised exceptions.
Munyoki Kilyungi
2025-04-22
Auto-pep8 files.
Munyoki Kilyungi
2025-04-22
Reduce arguments in run_async_cmd by using options dictionary.
Munyoki Kilyungi
2025-04-14
Include effect mean/SE for 4-way crosses in R/qtl results
zsloan
2025-04-08
Pass application log-level to the worker.
Frederick Muriuki Muriithi
2025-04-08
Use computed job queue to avoid collisions.
Frederick Muriuki Muriithi
2025-04-08
Add a function to compute the job queue from the settings.
Frederick Muriuki Muriithi
2025-04-08
APPLICATION_ENVIRONMENT: New configuration variable
Frederick Muriuki Muriithi
2025-04-08
Add logging to worker.
Frederick Muriuki Muriithi
2025-04-08
sheepdog.worker: Pass in the queue name on the CLI
Frederick Muriuki Muriithi
2025-04-08
BUG: Provide a tuple, of tuple of floats
Frederick Muriuki Muriithi
2025-04-08
Use correct key.
Frederick Muriuki Muriithi
2025-04-08
Indent code properly.
Frederick Muriuki Muriithi
2025-04-08
feat: Append GN3 computation completion marker to log file.
Alexander_Kabui
2025-04-08
fix: Pylint fix for unused variable.
Alexander_Kabui
2025-04-07
Remove debug logging: current_app.logger requires app context.
Frederick Muriuki Muriithi
2025-04-07
Log out debug messages separate from active statements.
Frederick Muriuki Muriithi
2025-04-07
Split the command if its a single, non-json-parseable string.
Frederick Muriuki Muriithi
2025-03-27
feat: Check for founder and covar file in rqtl2 metadata.
Alexander_Kabui
2025-03-21
Use HTTPS for LLM endpoint.
Munyoki Kilyungi
2025-03-18
Order species by species id.
Munyoki Kilyungi
2025-03-07
Merge pull request #218 from genenetwork/chores/refactor-qtl2-script
Alexander Kabui
2025-03-07
refactor function to process scan1 results.
Alexander_Kabui
2025-03-07
Convert wikiId and versionId to ints.
Munyoki Kilyungi
2025-03-07
Revert "fix: Replace file path fetching code in rqtl2.py with current_app.roo...
Munyoki Kilyungi
2025-03-04
Use self-holsted LLM API end-point.
Munyoki Kilyungi
2025-03-04
fix: Replace file path fetching code in rqtl2.py with current_app.root_path
Munyoki Kilyungi (aider)
2025-02-28
Eliminate carriage-return and newline characters.
Frederick Muriuki Muriithi
2025-02-28
Print out the stack trace to help debug failures.
Frederick Muriuki Muriithi
2025-02-28
Fix issues caught by mypy.
Frederick Muriuki Muriithi
2025-02-28
Fix linting errors.
Frederick Muriuki Muriithi
2025-02-26
feat: Add utility function for reading files and improve logging
Alexander_Kabui
2025-02-25
fix: handle extra columns in permutations CSV reader to prevent unpacking error.
Alexander_Kabui
2025-02-24
Fetch rscript from os env if it isn't set in the app's config.
Munyoki Kilyungi
2025-02-21
Fix versioning of WIKI entries.
Munyoki Kilyungi
2025-02-20
refactor: Skip permutation test when NO_OF_PERMUTATION less than 0.
Alexander_Kabui
2025-02-19
fix: Read and parse correct permutation file from R/qtl2.
Alexander_Kabui
2025-02-19
fix: Read and parse correct permutation file from R/qtl1
Alexander_Kabui
2025-02-10
feat: Add LMDB sample data retrieval API endpoint with tests
Munyoki Kilyungi (aider)
2025-02-07
refactor: Add rqtl2 default method and update unittests.
Alexander_Kabui
2025-02-07
feat: Add the qtl to method to be used.
Alexander_Kabui
2025-02-07
feat: Enable streaming functionality for rqtl2.
Alexander_Kabui
2025-02-07
fix: fix for fetching significance results.
Alexander_Kabui
2025-02-06
refactor: code refactoring.
Alexander_Kabui
2025-02-06
feat: Include the physical map position in results.
Alexander_Kabui
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