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AgeCommit message (Expand)Author
2022-07-28Update sample correlations code to use multiprocessingFrederick Muriuki Muriithi
2022-07-22mypy fixesAlexander_Kabui
2022-07-22pep8 fixesAlexander_Kabui
2022-07-22linting and tests fixesAlexander_Kabui
2022-07-22import rust_correlation when running gn3 as libAlexander_Kabui
2022-07-22compute num overlapAlexander_Kabui
2022-07-22fix for bug splitting list dataAlexander_Kabui
2022-07-22minor fixes for parsing dataAlexander_Kabui
2022-07-22code to parse tissue correlation inputAlexander_Kabui
2022-07-22mypy pylint fixesAlexander_Kabui
2022-07-22code to fetch correct sample corr dataAlexander_Kabui
2022-07-22delete dead_code;rename variablesAlexander_Kabui
2022-07-22minor fixesAlexander_Kabui
2022-07-11Allow CORS everywhere by defaultFrederick Muriuki Muriithi
2022-06-29use explicit parametersAlexander_Kabui
2022-06-29fix issuesAlexander_Kabui
2022-06-29pylint fixesAlexander
2022-06-29minor fixesAlexander
2022-06-29handle tmp files generationAlexander
2022-06-29parse output dataAlexander
2022-06-29pep8 formattingAlexander
2022-06-29new variable: CORRELATION_COMMANDAlexander
2022-06-29init rust correlation moduleAlexander
2022-06-28Parse the method from UI before passing it to external processFrederick Muriuki Muriithi
2022-06-21gn3: fs_helpers: Fix pylint errorsBonfaceKilz
2022-06-21gn3: fs_helpers: Remove ipfshttpclientBonfaceKilz
2022-06-21Replace lint code with human-readable textBonfaceKilz
2022-06-21db: correlations: Ignore pylint errorBonfaceKilz
2022-06-21db: correlations: Ignore typesBonfaceKilz
2022-06-21db: datasets.py: Ignore results from sparql.queryAndConvertBonfaceKilz
2022-06-20gn3: genodb: Retire get function.Arun Isaac
2022-06-20gn3: genodb: Match class and function names of GenotypeMatrix.Arun Isaac
2022-06-20gn3: genodb: Remove db, nrows and ncols fields from GenotypeMatrix.Arun Isaac
2022-06-20gn3: genodb: Mention reading entire matrix in module docstring.Arun Isaac
2022-06-20Restrict partial correlation method choicesFrederick Muriuki Muriithi
2022-06-17gn3: genodb: Rename Matrix named tuple to GenotypeMatrix.Arun Isaac
2022-06-17gn3: genodb: Allow retrieval of the entire genotype matrix.Arun Isaac
2022-06-17gn3: genodb: Read optimized storage for the current matrix.Arun Isaac
2022-06-09gn3: genodb: Remove blank line in module docstring.Arun Isaac
2022-06-09gn3: genodb: Rewrite without classes.Arun Isaac
2022-06-08gn3: genodb: Support reading columns.Arun Isaac
2022-06-08gn3: genodb: Read only the most recent genotype matrix.Arun Isaac
2022-06-08gn3: genodb: Open genotype database in read-only mode.Arun Isaac
2022-06-08gn3: genodb: Do not create genotype database if it does not exist.Arun Isaac
2022-06-08gn3: genodb: Decide on little endianness.Arun Isaac
2022-06-08gn3: genodb: Do not terminate database strings with null.Arun Isaac
2022-06-03gn3: Add genodb.Arun Isaac
2022-05-31Remove unnecessary statementFrederick Muriuki Muriithi
2022-05-31Extract utility functions from `fetch_all_database_data`Frederick Muriuki Muriithi
2022-05-30Pass trait data as args to `fix_strains` and fix some bugsFrederick Muriuki Muriithi
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