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2021-06-18Fix R/qtl command and the way keyword arguments are passedzsloan
2021-06-16add r-wgna packageAlexander Kabui
2021-06-16minor fixAlexander Kabui
2021-06-16refactor script and add testsAlexander Kabui
2021-06-16add fetch args functionAlexander Kabui
2021-06-15fix script path issuesAlexander Kabui
2021-06-14fix missing call to bicorAndPvalueAlexander Kabui
2021-06-14add biweight r script and testsAlexander Kabui
2021-06-07Rename json_data column to json_diff_dataBonfaceKilz
2021-06-07gn3: db: Fix how columns from tables is resolvedBonfaceKilz
2021-06-07gn3: db: Add "id_" property to metadata_audit class and mappingBonfaceKilz
2021-06-07gn3: db: Add "fetchall" method.BonfaceKilz
2021-06-07gn3: metadata_audit: Make props for MetadataAudit class optionalBonfaceKilz
2021-06-07gn3: db: Make "WHERE" clause optionalBonfaceKilz
2021-06-07gn3: db: Use correct DATACLASSMAP entry from metadata_auditBonfaceKilz
2021-06-07gn3: db: sort importsBonfaceKilz
2021-06-03gn3: db: Remove "escape_string" from importsBonfaceKilz
2021-06-03Use prepared statements for FETCH sql functionBonfaceKilz
2021-06-03gn3: db: Replace items() with keys()BonfaceKilz
2021-06-03Use prepared statements for UPDATE sql functionBonfaceKilz
2021-06-03gn3: db: Add new function for doing sql INSERTBonfaceKilz
2021-06-03Add data structures for the table metadata_auditBonfaceKilz
2021-06-03gn3: db: Add spacing before around "AND" in sql clauseBonfaceKilz
2021-06-03Get the diff between 2 dicts and return that as a dictBonfaceKilz
2021-06-03gn3: db: Return None if data and where are emptyBonfaceKilz
2021-05-30fix index error (#16)Alexander Kabui
2021-05-26Move the methods, "update" and "fetch", to gn3.dbBonfaceKilz
2021-05-26db: phenotypes: Fix publication_mappingBonfaceKilz
2021-05-26db: phenotypes: Fix typoBonfaceKilz
2021-05-25Include code that processes rqtl output files and returns actual results inst...zsloan
2021-05-20db: phenotypes: Add function for fetching a single resultBonfaceKilz
2021-05-20db: phenotypes: Add a dataclass mapBonfaceKilz
2021-05-20db: phenotypes: Add Publication table mappingBonfaceKilz
2021-05-20db: phenotypes: Rename phenotype_column_mappingBonfaceKilz
2021-05-20db: phenotypes: Add Publication dataclass and mappingBonfaceKilz
2021-05-20db: phenotypes: Generalise the update functionBonfaceKilz
2021-05-20db: phenotypes: Map a table to it's relevant dict mappingBonfaceKilz
2021-05-20db: phenotypes: Add type for DataclassBonfaceKilz
2021-05-20db: phenotypes: Put mapping def after dataclassBonfaceKilz
2021-05-20db: phenotypes: Add phenotype table mappingBonfaceKilz
2021-05-20db: phenotypes: Add dataclass to represent PublishXRefBonfaceKilz
2021-05-20db: phenotype: Make "pylint: disable=[R0902]" global for fileBonfaceKilz
2021-05-20db: phenotypes: Add a way of updating the Phenotype tableBonfaceKilz
2021-05-19Temporarily replace forward-slashes with underscores, since they can be inclu...zsloan
2021-05-18Removed len from this if statement, since an empty list evaluates to False by...zsloan
2021-05-18Account for boolean kwargs in compute() by storing them in a list, since they...zsloan
2021-05-18Account for boolean kwargs in compose_rqtl_cmdzsloan
2021-05-18Fixed generate_rqtl_cmd to make the kwarg hash from a combination of keywords...zsloan
2021-05-18Fixed variety of issues detected by pylintzsloan
2021-05-17Created compose_rqtl_command and generate_rqtl_command to create the actual c...zsloan