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AgeCommit message (Expand)Author
2022-12-06mypy and pylint fixesAlexander_Kabui
2022-12-02correlations: return `None` rather than zero for missing lit corrsFrederick Muriuki Muriithi
2022-11-29remove trailing whitespaceAlexanderKabui
2022-11-29remove unused function parameterAlexanderKabui
2022-11-28Catch a URLError when virtuoso isn't running at allMunyoki Kilyungi
2022-11-28Fix pylint errorsMunyoki Kilyungi
2022-11-28Fail gracefully when virtuoso is not accessibleMunyoki Kilyungi
2022-11-24auth: Check for authentication and fix errorsFrederick Muriuki Muriithi
2022-11-24auth: Implement `create_resource` functionFrederick Muriuki Muriithi
2022-11-24auth: Define base exceptionsFrederick Muriuki Muriithi
2022-11-24tests: Add test for `create_resource`Frederick Muriuki Muriithi
2022-11-23Create a new REST endpoint for fetching a phenotype's metadataMunyoki Kilyungi
2022-11-21auth: Prevent group leader from being a member of multiple groupsFrederick Muriuki Muriithi
2022-11-17auth: Finish implementation of `create_group_role`Frederick Muriuki Muriithi
2022-11-17auth: Define the `User` typeFrederick Muriuki Muriithi
2022-11-16auth: fix bugs in the codeFrederick Muriuki Muriithi
2022-11-16Inject SPARQLWrapper as a parameterMunyoki Kilyungi
2022-11-15auth: Add `create_group_role` function.Frederick Muriuki Muriithi
2022-11-15auth: Return results of calling function directlyFrederick Muriuki Muriithi
2022-11-15auth: Specify types for privileges, roles, groupsFrederick Muriuki Muriithi
2022-11-15auth: Add some typing information to the functionsFrederick Muriuki Muriithi
2022-11-15auth: Reorganise package - move function to `checks` moduleFrederick Muriuki Muriithi
2022-11-15pylint: Fix linting errors.Frederick Muriuki Muriithi
2022-11-14auth: Implement `create_group`Frederick Muriuki Muriithi
2022-11-14auth: Add test for `create_group`Frederick Muriuki Muriithi
2022-11-10Migrations: Add migration for 'resources' tableFrederick Muriuki Muriithi
2022-11-08Fix issue where only primary samples were used when all samples arezsloan
2022-11-08Tests: Generalise testing 'CREATE TABLE' migrationsFrederick Muriuki Muriithi
2022-11-08Settings: Provide default `AUTH_DB` setting.Frederick Muriuki Muriithi
2022-11-08Tests: Tests the credentials check systemFrederick Muriuki Muriithi
2022-11-03Add credentials checkingFrederick Muriuki Muriithi
2022-11-03Initialise the Auth(entic|oris)ation packagesFrederick Muriuki Muriithi
2022-11-02Re-implement RDF related code to use monads in its own moduleMunyoki Kilyungi
2022-11-02Fix pylint and mypy errorsMunyoki Kilyungi
2022-10-28Use Xapian index path from app settings.Arun Isaac
2022-10-28Disable various pylint checks on Connection class.Arun Isaac
2022-10-28Add search.Arun Isaac
2022-10-26Add xapian database connection context manager.Arun Isaac
2022-10-25Reshape column major genotype database storage correctly.Arun Isaac
2022-10-22fix issue;parsing sample data (#102)Alexander Kabui
2022-10-18Support server side SQL query retrieval.Arun Isaac
2022-10-18Add database connection context manager.Arun Isaac
2022-10-18Add monadic utilities.Munyoki Kilyungi
2022-10-06DEBUG: Collect more info for debuggingFrederick Muriuki Muriithi
2022-10-06DEBUG: Collect more information on possible failure.Frederick Muriuki Muriithi
2022-10-03Bug: Do not process data for output too earlyFrederick Muriuki Muriithi
2022-09-30Add escape char to avoid error notice.Frederick Muriuki Muriithi
2022-09-29Use the built-in csv module for file outputFrederick Muriuki Muriithi
2022-08-25revert for commit 6db3b2af8fc09999996d3acc09890a06f179c669;BugAlexander_Kabui
2022-08-23Remove conn.commit() and conn.rollback()Munyoki Kilyungi
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