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AgeCommit message (Expand)Author
2022-06-03gn3: Add genodb.Arun Isaac
2022-05-31Remove unnecessary statementFrederick Muriuki Muriithi
2022-05-31Extract utility functions from `fetch_all_database_data`Frederick Muriuki Muriithi
2022-05-30Pass trait data as args to `fix_strains` and fix some bugsFrederick Muriuki Muriithi
2022-05-27Move sql for CRUD operations on case-attrs from gn2 to gn3BonfaceKilz
2022-05-27Move sql for modifying case-attributes from gn2 to gn3BonfaceKilz
2022-05-27Return all the results from CaseAttributes column as isBonfaceKilz
2022-05-26Add Endpoint to get menu items for use in UIFrederick Muriuki Muriithi
2022-05-24Run partial correlations with external scriptFrederick Muriuki Muriithi
2022-05-24New script to compute partial correlationsFrederick Muriuki Muriithi
2022-05-21Fix linting errorsFrederick Muriuki Muriithi
2022-05-21Use multiprocessing to improve performanceFrederick Muriuki Muriithi
2022-05-21Process primary, target and control traits in a single iterationFrederick Muriuki Muriithi
2022-05-21Return generator object rather than tuplesFrederick Muriuki Muriithi
2022-05-16Run computation in one-shot asynchronous processFrederick Muriuki Muriithi
2022-05-06Fix linting and typing errorsFrederick Muriuki Muriithi
2022-05-06Hook up pcorrs with target traits computationsFrederick Muriuki Muriithi
2022-05-05Compute partial correlation with selected traitsFrederick Muriuki Muriithi
2022-05-05Extract common error checking. Rename function.Frederick Muriuki Muriithi
2022-05-03Refactor: Remove unnecessary loopFrederick Muriuki Muriithi
2022-04-29Replace whole header with the longest one, instead of just thezsloan
2022-04-29Get max string length instead when comparing headerszsloan
2022-04-12Delete "get_allowable_sampledata_headers"BonfaceKilz
2022-04-12Strip any newline, tab or carriage-return chars from sample dataBonfaceKilz
2022-04-07Fix pylint errorsBonfaceKilz
2022-04-07Fix mypy errorBonfaceKilz
2022-04-07Use case attribute id inside brackets if present during insertionsBonfaceKilz
2022-04-07Use case attribute id inside brackets if present during insertionsBonfaceKilz
2022-04-07Use case attribute id inside brackets if present during updatesBonfaceKilz
2022-04-07Add method for fetching the case_attributesBonfaceKilz
2022-04-07Run python black on fileBonfaceKilz
2022-04-07Add method for parsing a csv header from uploaded sample-data fileBonfaceKilz
2022-04-01Run python-black in fileBonfaceKilz
2022-03-30Revert "Run json.loads on request.get_json, since request.get_json was just r...Frederick Muriuki Muriithi
2022-03-29Remove unused moduleFrederick Muriuki Muriithi
2022-03-28Run json.loads on request.get_json, since request.get_json was just returning...zsloan
2022-03-23Run python-black on file and fix other pylint issues.BonfaceKilz
2022-03-22Fixes pylint errorszsloan
2022-03-22Fixed mypy typing errorszsloan
2022-03-22Tried to make the docstrings more consistentzsloan
2022-03-22Add typing to some functionszsloan
2022-03-22Add functions for getting proximal/distal markers for each pseudomarker posit...zsloan
2022-03-22Fix issue that causes R/qtl to always run pair-scan even if pair-scan isn't s...zsloan
2022-03-22Added genofile name to inputs for processing R/qtl pair-scan results, since i...zsloan
2022-03-22Removed quotes from beginning and end of chromosome stringzsloan
2022-03-22Fixed a cople function calls to use the updated function nameszsloan
2022-03-22Create pairscan_for_figure and pairscan_for_table functions that return the D...zsloan
2022-03-22Fix imports to import both process_rqtl_mapping and process_rqtl_pairscan in ...zsloan
2022-03-22Added pairscan boolean kwarg and process_rqtl_pairscan function for reading i...zsloan
2022-03-18Clean all csv fields before diffingBonfaceKilz
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