aboutsummaryrefslogtreecommitdiff
path: root/gn3
AgeCommit message (Expand)Author
2021-04-05fix for fetching dataset traits dataAlexander Kabui
2021-04-04refactor code for trait dataAlexander Kabui
2021-04-04fix:db connectionAlexander Kabui
2021-04-03add tests for getting trait dataAlexander Kabui
2021-03-31add mysqlclient in guixAlexander Kabui
2021-03-31add fetch dataset strain id,strain name and unittestsAlexander Kabui
2021-03-31add temp_db setup and integration testsAlexander Kabui
2021-03-31add datasets functions and endpointsAlexander Kabui
2021-03-30refactor retrieve trait sample data and testsAlexander Kabui
2021-03-30modify getting sample data from dbAlexander Kabui
2021-03-30register trait blueprintAlexander Kabui
2021-03-30initial commit for creating datasetAlexander Kabui
2021-03-30initial commit for creating trait and datasetsAlexander Kabui
2021-03-23Convert Path object to a strBonfaceKilz
2021-03-23Update where cached file is storedBonfaceKilz
2021-03-23Use ipfs to get genotype filesBonfaceKilz
2021-03-23Apply auto-pep8 formattingBonfaceKilz
2021-03-23Add function to cache ipfs filesBonfaceKilz
2021-03-23Re-add mypy conf fileBonfaceKilz
2021-03-17gn3: computations: correlations: Apply autopep-8.BonfaceKilz
2021-03-17gn3: file_utils: Apply autopep-8BonfaceKilz
2021-03-16delete unwanted correlation stuff (#5)Alexander Kabui
2021-03-16Refactor/clean up correlations (#4)Alexander Kabui
2021-03-15Remove undefined variableBonfaceKilz
2021-03-15Apply pep-8 formattingBonfaceKilz
2021-03-15Delete redundant gn3/config.pyBonfaceKilz
2021-03-13Correlation api (#2)Alexander Kabui
2021-03-10Rename "covariates" to "covars" in endpoints for consistencyBonfaceKilz
2021-03-10Queue the command only onceBonfaceKilz
2021-03-10Fix k-compute command when "loco" is trueBonfaceKilz
2021-03-10Call Redis hset correctly in the right orderBonfaceKilz
2021-03-10Apply yapf file formatting to fileBonfaceKilz
2021-03-10Add extra endpoint for when TOKEN isn't providedBonfaceKilz
2021-03-10Extract file to the correct locationBonfaceKilz
2021-03-08Remove unused importsBonfaceKilz
2021-03-08Delete "generate_gemma_computation_cmd"BonfaceKilz
2021-03-08Remove "/k-gwa-computation"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/<token>"BonfaceKilz
2021-03-08Replace "compute_k_values" with "generate_gemma_cmd"BonfaceKilz
2021-03-08Use new "compute_k_values" procedureBonfaceKilz
2021-03-08Add generic fn for computing k and gwa valuesBonfaceKilz
2021-03-08Apply pep-8 formattingBonfaceKilz
2021-03-08Add new endpointBonfaceKilz
2021-03-08Replace "generate_gemma_computation_cmd" with "compose_gemma_cmd"BonfaceKilz
2021-03-08bug: Put a space between gemma-wrapper argsBonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/loco/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/covars/<k_filename>/<token>"BonfaceKilz
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-30 04:31:19 +0000