aboutsummaryrefslogtreecommitdiff
path: root/gn3
AgeCommit message (Expand)Author
2021-11-04Partially implement `partial_correlation_recursive`Frederick Muriuki Muriithi
2021-11-04Implement `build_data_frame`Frederick Muriuki Muriithi
2021-11-04Create blackbox tests for some functions migrated from RFrederick Muriuki Muriithi
2021-11-01Stub `determine_partials`Frederick Muriuki Muriithi
2021-11-01Implement `compute_partial_correlations_fast`Frederick Muriuki Muriithi
2021-11-01Fix mypy issuesBonfaceKilz
2021-11-01Fix pylint issues in gn3.authenticationBonfaceKilz
2021-11-01Add auth moduleBonfaceKilz
2021-11-01Merge branch 'main' of github.com:genenetwork/genenetwork3 into partial-corre...Frederick Muriuki Muriithi
2021-11-01Retrieve indices of the selected samplesFrederick Muriuki Muriithi
2021-11-01Fix some linting errorsFrederick Muriuki Muriithi
2021-11-01Parse single line from CSV fileFrederick Muriuki Muriithi
2021-11-01Add some condition checking functionsFrederick Muriuki Muriithi
2021-10-29Feature/biweight reimplementation (#47)Alexander Kabui
2021-10-29Explicitly round the valuesFrederick Muriuki Muriithi
2021-10-29Specify ten (10) decimal placesFrederick Muriuki Muriithi
2021-10-29Fix linting and typing errorsFrederick Muriuki Muriithi
2021-10-29Rework sorting: remove `compare_tissue_correlation_absolute_values`Frederick Muriuki Muriithi
2021-10-29Complete `build_temporary_tissue_correlations_table`Frederick Muriuki Muriithi
2021-10-29Complete implementation of `batch_computed_tissue_correlation`Frederick Muriuki Muriithi
2021-10-29Move `correlations_of_all_tissue_traits`Frederick Muriuki Muriithi
2021-10-29Add missing commaFrederick Muriuki Muriithi
2021-10-29Implement `tissue_correlation` functionFrederick Muriuki Muriithi
2021-10-29Move the function to computations moduleFrederick Muriuki Muriithi
2021-10-29Move the partial_correlations module to gn3.computationsFrederick Muriuki Muriithi
2021-10-27Remove if clauses: replace with dictFrederick Muriuki Muriithi
2021-10-26Stub out `batch_computed_tissue_correlation` functionFrederick Muriuki Muriithi
2021-10-26Complete `correlations_of_all_tissue_traits`Frederick Muriuki Muriithi
2021-10-26Implement `fetch_gene_symbol_tissue_value_dict_for_trait`Frederick Muriuki Muriithi
2021-10-25Start implementation of `fetch_tissue_correlations` and dependenciesFrederick Muriuki Muriithi
2021-10-25Implement `partition_all` functionFrederick Muriuki Muriithi
2021-10-25Merge branch 'main' of github.com:genenetwork/genenetwork3 into partial-corre...Frederick Muriuki Muriithi
2021-10-25mypy:Incompatible types in assignment fixAlexander Kabui
2021-10-25mypy fix for none stdoutAlexander Kabui
2021-10-25pylint and pep8 formattingAlexander Kabui
2021-10-25fix unittestsAlexander Kabui
2021-10-25minor modification for emitting data:add namespacesAlexander Kabui
2021-10-25pep8 formatting,pylint fixesAlexander Kabui
2021-10-25add socket obj and emit processAlexander Kabui
2021-10-25fix issues serializing byte stringAlexander Kabui
2021-10-25rename key to image_dataAlexander Kabui
2021-10-25add function to process imagesAlexander Kabui
2021-10-25add function to capture output in real timeAlexander Kabui
2021-10-25Implement `fetch_literature_correlations` and depedenciesFrederick Muriuki Muriithi
2021-10-25Implement `get_filename` for correlationsFrederick Muriuki Muriithi
2021-10-21Implement `translate_to_mouse_gene_id` functionFrederick Muriuki Muriithi
2021-10-21Implement `find_identical_traits` functionFrederick Muriuki Muriithi
2021-10-19Implement remaining `fix_samples` functionalityFrederick Muriuki Muriithi
2021-10-19Implement `dictify_by_samples`Frederick Muriuki Muriithi
2021-10-19Implement `control_samples` function as is in GN1Frederick Muriuki Muriithi