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:
genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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2021-03-15
Delete redundant gn3/config.py
BonfaceKilz
2021-03-13
Correlation api (#2)
Alexander Kabui
2021-03-10
Rename "covariates" to "covars" in endpoints for consistency
BonfaceKilz
2021-03-10
Queue the command only once
BonfaceKilz
2021-03-10
Fix k-compute command when "loco" is true
BonfaceKilz
2021-03-10
Call Redis hset correctly in the right order
BonfaceKilz
2021-03-10
Apply yapf file formatting to file
BonfaceKilz
2021-03-10
Add extra endpoint for when TOKEN isn't provided
BonfaceKilz
2021-03-10
Extract file to the correct location
BonfaceKilz
2021-03-08
Remove unused imports
BonfaceKilz
2021-03-08
Delete "generate_gemma_computation_cmd"
BonfaceKilz
2021-03-08
Remove "/k-gwa-computation"
BonfaceKilz
2021-03-08
Add "/k-gwa-compute/covars/loco/<chromosomes>/maf/<maf>/<token>"
BonfaceKilz
2021-03-08
Add "/gemma/k-gwa-compute/loco/<chromosomes>/maf/<maf>/<token>"
BonfaceKilz
2021-03-08
Add "/k-gwa-compute/covars/<token>"
BonfaceKilz
2021-03-08
Add "/gemma/k-gwa-compute/<token>"
BonfaceKilz
2021-03-08
Replace "compute_k_values" with "generate_gemma_cmd"
BonfaceKilz
2021-03-08
Use new "compute_k_values" procedure
BonfaceKilz
2021-03-08
Add generic fn for computing k and gwa values
BonfaceKilz
2021-03-08
Apply pep-8 formatting
BonfaceKilz
2021-03-08
Add new endpoint
BonfaceKilz
2021-03-08
Replace "generate_gemma_computation_cmd" with "compose_gemma_cmd"
BonfaceKilz
2021-03-08
bug: Put a space between gemma-wrapper args
BonfaceKilz
2021-03-08
Add new endpoint: "/gwa-compute/<k_filename>/loco/maf/<maf>/<token>"
BonfaceKilz
2021-03-08
Add new endpoint: "/gwa-compute/covars/<k_filename>/<token>"
BonfaceKilz
2021-03-08
Add new endpoint: "/gwa-compute/<k_filename>/<token>"
BonfaceKilz
2021-03-08
Add new endpoint: "/gemma/k-compute/loco/<chromosomes>/<token>"
BonfaceKilz
2021-03-08
Prepend all endpoints with "api"
BonfaceKilz
2021-03-08
Add new endpoint: "/gemma/k-compute/<token>"
BonfaceKilz
2021-03-08
Create a more generic procedure for getting hash values of files
BonfaceKilz
2021-03-08
Replace APP_DEFAULTS dict with actual conf params
BonfaceKilz
2021-03-08
Delete "lookup_file" procedure
BonfaceKilz
2021-03-08
Use new extract_uploaded_file fn when uploading metadata
BonfaceKilz
2021-03-08
Extract files to "/TMPDIR/TOKEN"
BonfaceKilz
2021-03-08
Move "generate_random_n_string" to file_utils
BonfaceKilz
2021-03-08
Fix failing tests
BonfaceKilz
2021-03-08
gn3: commands: Update docstring
BonfaceKilz
2021-03-08
Add extra endpoint for checking the status of a command
BonfaceKilz
2021-03-08
Make the name of the redis job queue configurable
BonfaceKilz
2021-02-24
Rename "/gemma/run" to "/gemma/k-gwa-computation"
BonfaceKilz
2021-02-24
Update how gemma(extracted from gn2) is computed
BonfaceKilz
2021-02-24
Create a new helper function for generating k_values and GWA
BonfaceKilz
2021-02-24
Add procedure that checks whether a list of paths exist
BonfaceKilz
2021-02-24
Check if phenotype exists before creating one
BonfaceKilz
2021-02-24
Add new procedure that computes the hash of an array of strings
BonfaceKilz
2021-02-24
Add mypy-typing to function
BonfaceKilz
2021-02-24
Append random 6 chars to generated phenotype file
BonfaceKilz
2021-02-24
Create a new method for generating a valid phenotype file on the fly
BonfaceKilz
2021-02-24
Add GENODIR extra param
BonfaceKilz
2021-02-24
Add endpoint for running GEMMA
BonfaceKilz
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