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2022-11-08Tests: Generalise testing 'CREATE TABLE' migrationsFrederick Muriuki Muriithi
2022-11-08Settings: Provide default `AUTH_DB` setting.Frederick Muriuki Muriithi
2022-11-08Tests: Tests the credentials check systemFrederick Muriuki Muriithi
2022-11-03Add credentials checkingFrederick Muriuki Muriithi
2022-11-03Initialise the Auth(entic|oris)ation packagesFrederick Muriuki Muriithi
2022-11-02Re-implement RDF related code to use monads in its own moduleMunyoki Kilyungi
2022-11-02Fix pylint and mypy errorsMunyoki Kilyungi
2022-10-28Use Xapian index path from app settings.Arun Isaac
2022-10-28Disable various pylint checks on Connection class.Arun Isaac
2022-10-28Add search.Arun Isaac
2022-10-26Add xapian database connection context manager.Arun Isaac
2022-10-25Reshape column major genotype database storage correctly.Arun Isaac
2022-10-22fix issue;parsing sample data (#102)Alexander Kabui
2022-10-18Support server side SQL query retrieval.Arun Isaac
2022-10-18Add database connection context manager.Arun Isaac
2022-10-18Add monadic utilities.Munyoki Kilyungi
2022-10-06DEBUG: Collect more info for debuggingFrederick Muriuki Muriithi
2022-10-06DEBUG: Collect more information on possible failure.Frederick Muriuki Muriithi
2022-10-03Bug: Do not process data for output too earlyFrederick Muriuki Muriithi
2022-09-30Add escape char to avoid error notice.Frederick Muriuki Muriithi
2022-09-29Use the built-in csv module for file outputFrederick Muriuki Muriithi
2022-08-25revert for commit 6db3b2af8fc09999996d3acc09890a06f179c669;BugAlexander_Kabui
2022-08-23Remove conn.commit() and conn.rollback()Munyoki Kilyungi
2022-08-22Use non-default MySQL port if presentFrederick Muriuki Muriithi
2022-08-12Add mandatory/expected fields to parsed data.Frederick Muriuki Muriithi
2022-08-10Fix returned value for 'parse_correlation_output'Frederick Muriuki Muriithi
2022-08-10code refactoringFrederick Muriuki Muriithi
2022-08-10remove unnecessary parsing of floatsAlexander_Kabui
2022-08-10code refactoringFrederick Muriuki Muriithi
2022-08-10remove unnecessary parsing of floatsAlexander_Kabui
2022-08-10enhancements for rust tissueFrederick Muriuki Muriithi
2022-08-10pylint fixesAlexander_Kabui
2022-08-10code refactoringAlexander_Kabui
2022-08-10remove unnessary codeAlexander_Kabui
2022-08-10remove unnecessary parsing of floatsAlexander_Kabui
2022-08-10merge for resultsAlexander_Kabui
2022-08-10enhancements for rust tissueAlexander_Kabui
2022-08-03Refactor: Remove unnecessary whitespace and nameFrederick Muriuki Muriithi
2022-08-03Refactor: Remove unnecessary iterations and nameFrederick Muriuki Muriithi
2022-07-29Fix failing testsFrederick Muriuki Muriithi
2022-07-28Add command to run the sample correlations in an external processFrederick Muriuki Muriithi
2022-07-28Update sample correlations code to use multiprocessingFrederick Muriuki Muriithi
2022-07-22mypy fixesAlexander_Kabui
2022-07-22pep8 fixesAlexander_Kabui
2022-07-22linting and tests fixesAlexander_Kabui
2022-07-22import rust_correlation when running gn3 as libAlexander_Kabui
2022-07-22compute num overlapAlexander_Kabui
2022-07-22fix for bug splitting list dataAlexander_Kabui
2022-07-22minor fixes for parsing dataAlexander_Kabui
2022-07-22code to parse tissue correlation inputAlexander_Kabui
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