Age | Commit message (Expand) | Author |
2021-05-10 | db: species: Add method for fetching all species | BonfaceKilz |
2021-05-08 | db: species: Fetch chromosomes using a group or species name...* gn3/db/species.py (get_chromosome): New function.
| BonfaceKilz |
2021-05-08 | gn3: db_utils: Remove mypy ignore stub...MySQLdb is already ignored in ".mypy.ini", added in 88c33df.
| BonfaceKilz |
2021-05-08 | Fix pep-8 errors | BonfaceKilz |
2021-05-08 | db: traits: Add extra method for looking up webqtl datasets | BonfaceKilz |
2021-05-08 | db: traits: Update method for inserting publication method | BonfaceKilz |
2021-05-08 | Add method for inserting publication_data | BonfaceKilz |
2021-05-08 | Add webqtlCaseData DS to keep track of case data in one trait | BonfaceKilz |
2021-05-08 | Replace namedtuple with a dataclass | BonfaceKilz |
2021-05-08 | Add method for inserting phenotypes | BonfaceKilz |
2021-05-08 | Add method for inserting publications | BonfaceKilz |
2021-05-08 | Add method to fetch riset name and id | BonfaceKilz |
2021-05-08 | Add endpoints for (batch) entering phenotypes and genotypes | BonfaceKilz |
2021-05-08 | Add extra procedure for parsing a genotype file...* gn3/computations/parsers.py (parse_genofile): New procedure.
* tests/unit/computations/test_parsers.py: New test files for above.
| BonfaceKilz |
2021-05-03 | add default no of cores | Alexander Kabui |
2021-05-03 | modify default SQL_URI | Alexander Kabui |
2021-05-03 | add trait_id fix mypy issues | Alexander Kabui |
2021-05-03 | minor fixes for tiss correlation tests and naming | Alexander Kabui |
2021-05-03 | replace database with conn | Alexander Kabui |
2021-05-02 | remove trait and dataset blueprint | Alexander Kabui |
2021-05-02 | delete dataset and trait files | Alexander Kabui |
2021-04-20 | pep8 formatting | Alexander Kabui |
2021-04-20 | add experiment function for computing tissue correlation using multiprocessing | Alexander Kabui |
2021-04-18 | refactor:return trait_name in corr_results | Alexander Kabui |
2021-04-17 | ad pep8 formatting | Alexander Kabui |
2021-04-17 | add sort for correlation results...refactor return data type for tissue and lit
| Alexander Kabui |
2021-04-16 | add benchmark function for sample r | Alexander Kabui |
2021-04-16 | benchmark normal function for sample r | Alexander Kabui |
2021-04-15 | optimization for sample correlation | Alexander Kabui |
2021-04-15 | test endpoint for fetching probeset data types | Alexander Kabui |
2021-04-12 | replace experimental db | Alexander Kabui |
2021-04-12 | fix merge conflict | Alexander Kabui |
2021-04-12 | Integrate correlation API...- add new api for gn2-gn3 sample r integration
- delete map for sample list to values
- add db util file
- add python msql-client dependency
- add db for fetching lit correlation results
- add unittests for db utils
- add tests for db_utils
- modify api for fetching lit correlation results
- refactor Mock Database Connector and unittests
- add sql url parser
- add SQL URI env variable
- refactor code for db utils
- modify return data for lit correlation
- refactor tissue correlation endpoint
- replace db_instance with conn | Alexander Kabui |
2021-04-06 | fix Docstrings | Alexander Kabui |
2021-04-06 | delete unnecessary functions and comments | Alexander Kabui |
2021-04-05 | fix for fetching dataset traits data | Alexander Kabui |
2021-04-04 | refactor code for trait data...modify unittest and integration tests for datasets
| Alexander Kabui |
2021-04-04 | fix:db connection | Alexander Kabui |
2021-04-03 | add tests for getting trait data | Alexander Kabui |
2021-03-31 | add mysqlclient in guix...add env variable for GN2_URL
| Alexander Kabui |
2021-03-31 | add fetch dataset strain id,strain name and unittests | Alexander Kabui |
2021-03-31 | add temp_db setup and integration tests | Alexander Kabui |
2021-03-31 | add datasets functions and endpoints | Alexander Kabui |
2021-03-30 | refactor retrieve trait sample data and tests | Alexander Kabui |
2021-03-30 | modify getting sample data from db | Alexander Kabui |
2021-03-30 | register trait blueprint | Alexander Kabui |
2021-03-30 | initial commit for creating dataset | Alexander Kabui |
2021-03-30 | initial commit for creating trait and datasets | Alexander Kabui |
2021-03-23 | Convert Path object to a str...* gn3/file_utils.py (cache_ipfs_file): Return a str instead of a path object.
* tests/unit/test_file_utils.py: Update failing tests.
| BonfaceKilz |
2021-03-23 | Update where cached file is stored | BonfaceKilz |