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AgeCommit message (Expand)Author
2021-03-10Queue the command only onceBonfaceKilz
2021-03-10Fix k-compute command when "loco" is trueBonfaceKilz
2021-03-10Call Redis hset correctly in the right orderBonfaceKilz
2021-03-10Apply yapf file formatting to fileBonfaceKilz
2021-03-10Add extra endpoint for when TOKEN isn't providedBonfaceKilz
2021-03-10Extract file to the correct locationBonfaceKilz
2021-03-08Remove unused importsBonfaceKilz
2021-03-08Delete "generate_gemma_computation_cmd"BonfaceKilz
2021-03-08Remove "/k-gwa-computation"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/loco/<chromosomes>/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add "/k-gwa-compute/covars/<token>"BonfaceKilz
2021-03-08Add "/gemma/k-gwa-compute/<token>"BonfaceKilz
2021-03-08Replace "compute_k_values" with "generate_gemma_cmd"BonfaceKilz
2021-03-08Use new "compute_k_values" procedureBonfaceKilz
2021-03-08Add generic fn for computing k and gwa valuesBonfaceKilz
2021-03-08Apply pep-8 formattingBonfaceKilz
2021-03-08Add new endpointBonfaceKilz
2021-03-08Replace "generate_gemma_computation_cmd" with "compose_gemma_cmd"BonfaceKilz
2021-03-08bug: Put a space between gemma-wrapper argsBonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/loco/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/covars/<k_filename>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gemma/k-compute/loco/<chromosomes>/<token>"BonfaceKilz
2021-03-08Prepend all endpoints with "api"BonfaceKilz
2021-03-08Add new endpoint: "/gemma/k-compute/<token>"BonfaceKilz
2021-03-08Create a more generic procedure for getting hash values of filesBonfaceKilz
2021-03-08Replace APP_DEFAULTS dict with actual conf paramsBonfaceKilz
2021-03-08Delete "lookup_file" procedureBonfaceKilz
2021-03-08Use new extract_uploaded_file fn when uploading metadataBonfaceKilz
2021-03-08Extract files to "/TMPDIR/TOKEN"BonfaceKilz
2021-03-08Move "generate_random_n_string" to file_utilsBonfaceKilz
2021-03-08Fix failing testsBonfaceKilz
2021-03-08gn3: commands: Update docstringBonfaceKilz
2021-03-08Add extra endpoint for checking the status of a commandBonfaceKilz
2021-03-08Make the name of the redis job queue configurableBonfaceKilz
2021-02-24Rename "/gemma/run" to "/gemma/k-gwa-computation"BonfaceKilz
2021-02-24Update how gemma(extracted from gn2) is computedBonfaceKilz
2021-02-24Create a new helper function for generating k_values and GWABonfaceKilz
2021-02-24Add procedure that checks whether a list of paths existBonfaceKilz
2021-02-24Check if phenotype exists before creating oneBonfaceKilz
2021-02-24Add new procedure that computes the hash of an array of stringsBonfaceKilz
2021-02-24Add mypy-typing to functionBonfaceKilz
2021-02-24Append random 6 chars to generated phenotype fileBonfaceKilz
2021-02-24Create a new method for generating a valid phenotype file on the flyBonfaceKilz
2021-02-24Add GENODIR extra paramBonfaceKilz
2021-02-24Add endpoint for running GEMMABonfaceKilz
2021-02-24Delete unnececessary gemma endpointsBonfaceKilz
2021-02-24Remove test "/gemma" stubBonfaceKilz
2021-02-24gn3: api: gemma: Add endpoint for checking gemma-wrapper versionBonfaceKilz
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