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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
luna
main
migrate-to-python3.10
oauth2_auth_flow
refactor-circular-import
rework-genotype-linking
technical-specification
GeneNetwork3 REST API for data science and machine learning
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2021-06-18
Rename json_data column to json_diff_data
BonfaceKilz
2021-06-18
gn3: db: Fix how columns from tables is resolved
BonfaceKilz
2021-06-18
gn3: db: Add "id_" property to metadata_audit class and mapping
BonfaceKilz
2021-06-18
gn3: db: Add "fetchall" method.
BonfaceKilz
2021-06-18
gn3: metadata_audit: Make props for MetadataAudit class optional
BonfaceKilz
2021-06-18
gn3: db: Make "WHERE" clause optional
...
* gn3/db/__init__.py (fetchone): Make "WHERE" an Optional arg.
BonfaceKilz
2021-06-18
gn3: db: Use correct DATACLASSMAP entry from metadata_audit
BonfaceKilz
2021-06-18
gn3: db: sort imports
BonfaceKilz
2021-06-18
gn3: db: Remove "escape_string" from imports
...
We use prepared statements, so no need to have this.
BonfaceKilz
2021-06-18
Use prepared statements for FETCH sql function
BonfaceKilz
2021-06-18
gn3: db: Replace items() with keys()
...
* gn3/db/__init__.py (diff_from_dict): We only use the keys of the dict!
BonfaceKilz
2021-06-18
Use prepared statements for UPDATE sql function
BonfaceKilz
2021-06-18
gn3: db: Add new function for doing sql INSERT
BonfaceKilz
2021-06-18
Add data structures for the table metadata_audit
BonfaceKilz
2021-06-18
gn3: db: Add spacing before around "AND" in sql clause
BonfaceKilz
2021-06-18
Get the diff between 2 dicts and return that as a dict
BonfaceKilz
2021-06-18
gn3: db: Return None if data and where are empty
BonfaceKilz
2021-06-18
fix index error (#16)
Alexander Kabui
2021-06-18
Move the methods, "update" and "fetch", to gn3.db
BonfaceKilz
2021-06-18
db: phenotypes: Fix publication_mapping
BonfaceKilz
2021-06-18
db: phenotypes: Fix typo
BonfaceKilz
2021-06-18
db: phenotypes: Add function for fetching a single result
...
* gn3/db/phenotypes.py (fetchone): New function.
BonfaceKilz
2021-06-18
db: phenotypes: Add a dataclass map
...
Maps a string to it's dataclass.
BonfaceKilz
2021-06-18
db: phenotypes: Add Publication table mapping
BonfaceKilz
2021-06-18
db: phenotypes: Rename phenotype_column_mapping
BonfaceKilz
2021-06-18
db: phenotypes: Add Publication dataclass and mapping
BonfaceKilz
2021-06-18
db: phenotypes: Generalise the update function
...
* gn3/db/phenotypes.py (update_phenotype): Delete it. (update): New, more general function.
BonfaceKilz
2021-06-18
db: phenotypes: Map a table to it's relevant dict mapping
BonfaceKilz
2021-06-18
db: phenotypes: Add type for Dataclass
...
See: https://www.py4u.net/discuss/188952
BonfaceKilz
2021-06-18
db: phenotypes: Put mapping def after dataclass
BonfaceKilz
2021-06-18
db: phenotypes: Add phenotype table mapping
BonfaceKilz
2021-06-18
db: phenotypes: Add dataclass to represent PublishXRef
BonfaceKilz
2021-06-18
db: phenotype: Make "pylint: disable=[R0902]" global for file
BonfaceKilz
2021-06-18
db: phenotypes: Add a way of updating the Phenotype table
...
* gn3/db/phenotypes.py (Phenotype): New dataclass. (update_phenotype): New function. [phenotype_column_mapping]: New variable.
BonfaceKilz
2021-06-18
Fixed issue where all bool kwargs were always being passed to generate_rqtl_c...
zsloan
2021-06-18
Fix R/qtl command and the way keyword arguments are passed
zsloan
2021-05-25
Include code that processes rqtl output files and returns actual results inst...
zsloan
2021-05-19
Temporarily replace forward-slashes with underscores, since they can be inclu...
zsloan
2021-05-18
Removed len from this if statement, since an empty list evaluates to False by...
zsloan
2021-05-18
Account for boolean kwargs in compute() by storing them in a list, since they...
zsloan
2021-05-18
Account for boolean kwargs in compose_rqtl_cmd
zsloan
2021-05-18
Fixed generate_rqtl_cmd to make the kwarg hash from a combination of keywords...
zsloan
2021-05-18
Fixed variety of issues detected by pylint
zsloan
2021-05-17
Created compose_rqtl_command and generate_rqtl_command to create the actual c...
zsloan
2021-05-17
Read in kwargs fromrequest and pass the command, tmpdir, and kwargs to genera...
zsloan
2021-05-17
Added RQTL_WRAPPER_CMD (which is fetched from environment) in settings.py
zsloan
2021-05-17
Add rqtl.py for rqtl endpoints
zsloan
2021-05-17
Register rqtl blueprint
zsloan
2021-05-15
resolve merge conflict
Alexander Kabui
2021-05-15
Merge branch 'main' into feature/minor-fixes
Alexander Kabui
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