aboutsummaryrefslogtreecommitdiff
path: root/gn3
AgeCommit message (Expand)Author
2021-03-08Replace "generate_gemma_computation_cmd" with "compose_gemma_cmd"BonfaceKilz
2021-03-08bug: Put a space between gemma-wrapper argsBonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/loco/maf/<maf>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/covars/<k_filename>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gwa-compute/<k_filename>/<token>"BonfaceKilz
2021-03-08Add new endpoint: "/gemma/k-compute/loco/<chromosomes>/<token>"BonfaceKilz
2021-03-08Prepend all endpoints with "api"BonfaceKilz
2021-03-08Add new endpoint: "/gemma/k-compute/<token>"BonfaceKilz
2021-03-08Create a more generic procedure for getting hash values of filesBonfaceKilz
2021-03-08Replace APP_DEFAULTS dict with actual conf paramsBonfaceKilz
2021-03-08Delete "lookup_file" procedureBonfaceKilz
2021-03-08Use new extract_uploaded_file fn when uploading metadataBonfaceKilz
2021-03-08Extract files to "/TMPDIR/TOKEN"BonfaceKilz
2021-03-08Move "generate_random_n_string" to file_utilsBonfaceKilz
2021-03-08Fix failing testsBonfaceKilz
2021-03-08gn3: commands: Update docstringBonfaceKilz
2021-03-08Add extra endpoint for checking the status of a commandBonfaceKilz
2021-03-08Make the name of the redis job queue configurableBonfaceKilz
2021-02-24Rename "/gemma/run" to "/gemma/k-gwa-computation"BonfaceKilz
2021-02-24Update how gemma(extracted from gn2) is computedBonfaceKilz
2021-02-24Create a new helper function for generating k_values and GWABonfaceKilz
2021-02-24Add procedure that checks whether a list of paths existBonfaceKilz
2021-02-24Check if phenotype exists before creating oneBonfaceKilz
2021-02-24Add new procedure that computes the hash of an array of stringsBonfaceKilz
2021-02-24Add mypy-typing to functionBonfaceKilz
2021-02-24Append random 6 chars to generated phenotype fileBonfaceKilz
2021-02-24Create a new method for generating a valid phenotype file on the flyBonfaceKilz
2021-02-24Add GENODIR extra paramBonfaceKilz
2021-02-24Add endpoint for running GEMMABonfaceKilz
2021-02-24Delete unnececessary gemma endpointsBonfaceKilz
2021-02-24Remove test "/gemma" stubBonfaceKilz
2021-02-24gn3: api: gemma: Add endpoint for checking gemma-wrapper versionBonfaceKilz
2021-02-24gn3: commands: Remove token and metadata_filename argsBonfaceKilz
2021-02-24Add stubbed gemma endpointsBonfaceKilz
2021-02-16Return the correct message and status code in "/metadata/upload"BonfaceKilz
2021-02-16Register "general" blueprint endpointsBonfaceKilz
2021-02-16Add extra default config for bcryptBonfaceKilz
2021-02-16Add new endpoint for uploading dataBonfaceKilz
2021-02-16Add procedure for uploading gzipped fileBonfaceKilz
2021-02-16Add extra option to set email when queueing CMDBonfaceKilz
2021-02-16Add basic integration tests to test out the APIBonfaceKilz
2021-02-16Register blueprints in gn3/app.pyBonfaceKilz
2021-02-16gn3: commands: Add new procedure for running a commandBonfaceKilz
2021-02-15Add default redis configBonfaceKilz
2021-02-15Add test stubbed gemma endpointBonfaceKilz
2021-02-15Bootsrap the flask applicationBonfaceKilz
2021-02-12Add configuration file for the projectBonfaceKilz
2021-02-12Use sorted list of files when calculating md5sums of directoryBonfaceKilz
2021-02-12Add custom gn3 exceptionsBonfaceKilz
2021-02-12Add new procedure for queueing a commandBonfaceKilz
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-23 04:04:46 +0000