aboutsummaryrefslogtreecommitdiff
path: root/gn3
AgeCommit message (Expand)Author
2021-09-23Add functions for getting proximal/distal markers for each pseudomarker posit...zsloan
2021-09-23Fix issue that causes R/qtl to always run pair-scan even if pair-scan isn't s...zsloan
2021-09-23Added genofile name to inputs for processing R/qtl pair-scan results, since i...zsloan
2021-09-23Removed quotes from beginning and end of chromosome stringzsloan
2021-09-23Fixed a cople function calls to use the updated function nameszsloan
2021-09-23Create pairscan_for_figure and pairscan_for_table functions that return the D...zsloan
2021-09-23Fix imports to import both process_rqtl_mapping and process_rqtl_pairscan in ...zsloan
2021-09-23Added pairscan boolean kwarg and process_rqtl_pairscan function for reading i...zsloan
2021-08-20Minor correlation fixes (#36)Alexander Kabui
2021-08-18Test the clusteringMuriithi Frederick Muriuki
2021-08-18Fix obvious linting errorsMuriithi Frederick Muriuki
2021-08-18Make child sequence a listMuriithi Frederick Muriuki
2021-08-18Provide top-level `riset` key-value pairMuriithi Frederick Muriuki
2021-08-18Add tests and fix errors caught with testsMuriithi Frederick Muriuki
2021-08-18Fix errors: add in missing parenthesisMuriithi Frederick Muriuki
2021-08-18Initialise heatmap generation moduleMuriithi Frederick Muriuki
2021-08-16Merge pull request #32 from genenetwork/heatmap_decompose_db_retrievalBonfaceKilz
2021-08-12Fix linting errorsMuriithi Frederick Muriuki
2021-08-12Import missing definitionsMuriithi Frederick Muriuki
2021-08-11use normal function for correlation (#34)Alexander Kabui
2021-08-09Build up the heatmap dataMuriithi Frederick Muriuki
2021-08-09Set up the trait dataset type correctlyMuriithi Frederick Muriuki
2021-08-09Retrieve the trait dataMuriithi Frederick Muriuki
2021-08-09Add missing arguments. Fix typo.Muriithi Frederick Muriuki
2021-08-09Fix linting errorsMuriithi Frederick Muriuki
2021-08-08Only load extra data if the traits have basic infoMuriithi Frederick Muriuki
2021-08-08Merge branch 'main' of github.com:genenetwork/genenetwork3 into heatmap_decom...Muriithi Frederick Muriuki
2021-08-07Add gunicorn support for productionPjotr Prins
2021-08-05db: traits: Return unique values when fetching sample dataBonfaceKilz
2021-08-05Reorganise the database codeMuriithi Frederick Muriuki
2021-08-05Build up trait_name items from full nameMuriithi Frederick Muriuki
2021-08-04Fix issues caught by pylintMuriithi Frederick Muriuki
2021-08-04Retrieve the RISet and RISet ID valuesMuriithi Frederick Muriuki
2021-08-04Add tests for post-processing functionsMuriithi Frederick Muriuki
2021-08-04Avoid string interpolation: use prepared statementMuriithi Frederick Muriuki
2021-07-30Rework db functions to enable postprocessingMuriithi Frederick Muriuki
2021-07-30Add module for common utilitiesMuriithi Frederick Muriuki
2021-07-30Return dict from query functionsMuriithi Frederick Muriuki
2021-07-29Merge branch 'main' into Feature/Update-db-from-csv-dataBonfaceKilz
2021-07-29Delete "update_raw" and it's test-casesBonfaceKilz
2021-07-29Add method for updating values from a sample datasetBonfaceKilz
2021-07-29Add partial type annotations for slink moduleMuriithi Frederick Muriuki
2021-07-29Add type annotations to the functionMuriithi Frederick Muriuki
2021-07-29Retrieve trait informationMuriithi Frederick Muriuki
2021-07-29Make name retrieval more generalMuriithi Frederick Muriuki
2021-07-29Retrieve 'ProbeSet' trait nameMuriithi Frederick Muriuki
2021-07-29db: traits: Remove publishdata columnBonfaceKilz
2021-07-26gn3: db: Create a raw update queryBonfaceKilz
2021-07-26db: traits: Fetch sample_data from a trait in csv formBonfaceKilz
2021-07-26Merge branch 'main' of github.com:genenetwork/genenetwork3Muriithi Frederick Muriuki
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-27 07:44:01 +0000