| Age | Commit message (Expand) | Author |
|---|
| 2021-06-07 | gn3: db: Add "fetchall" method. | BonfaceKilz |
| 2021-06-07 | gn3: metadata_audit: Make props for MetadataAudit class optional | BonfaceKilz |
| 2021-06-07 | gn3: db: Make "WHERE" clause optional...* gn3/db/__init__.py (fetchone): Make "WHERE" an Optional arg.
| BonfaceKilz |
| 2021-06-07 | gn3: db: Use correct DATACLASSMAP entry from metadata_audit | BonfaceKilz |
| 2021-06-07 | gn3: db: sort imports | BonfaceKilz |
| 2021-06-03 | gn3: db: Remove "escape_string" from imports...We use prepared statements, so no need to have this.
| BonfaceKilz |
| 2021-06-03 | Use prepared statements for FETCH sql function | BonfaceKilz |
| 2021-06-03 | gn3: db: Replace items() with keys()...* gn3/db/__init__.py (diff_from_dict): We only use the keys of the dict!
| BonfaceKilz |
| 2021-06-03 | Use prepared statements for UPDATE sql function | BonfaceKilz |
| 2021-06-03 | gn3: db: Add new function for doing sql INSERT | BonfaceKilz |
| 2021-06-03 | Add data structures for the table metadata_audit | BonfaceKilz |
| 2021-06-03 | gn3: db: Add spacing before around "AND" in sql clause | BonfaceKilz |
| 2021-06-03 | Get the diff between 2 dicts and return that as a dict | BonfaceKilz |
| 2021-06-03 | gn3: db: Return None if data and where are empty | BonfaceKilz |
| 2021-05-30 | fix index error (#16) | Alexander Kabui |
| 2021-05-26 | Move the methods, "update" and "fetch", to gn3.db | BonfaceKilz |
| 2021-05-26 | db: phenotypes: Fix publication_mapping | BonfaceKilz |
| 2021-05-26 | db: phenotypes: Fix typo | BonfaceKilz |
| 2021-05-25 | Include code that processes rqtl output files and returns actual results inst... | zsloan |
| 2021-05-20 | db: phenotypes: Add function for fetching a single result...* gn3/db/phenotypes.py (fetchone): New function.
| BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add a dataclass map...Maps a string to it's dataclass.
| BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add Publication table mapping | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Rename phenotype_column_mapping | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add Publication dataclass and mapping | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Generalise the update function...* gn3/db/phenotypes.py (update_phenotype): Delete it.
(update): New, more general function.
| BonfaceKilz |
| 2021-05-20 | db: phenotypes: Map a table to it's relevant dict mapping | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add type for Dataclass...See: https://www.py4u.net/discuss/188952
| BonfaceKilz |
| 2021-05-20 | db: phenotypes: Put mapping def after dataclass | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add phenotype table mapping | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add dataclass to represent PublishXRef | BonfaceKilz |
| 2021-05-20 | db: phenotype: Make "pylint: disable=[R0902]" global for file | BonfaceKilz |
| 2021-05-20 | db: phenotypes: Add a way of updating the Phenotype table...* gn3/db/phenotypes.py (Phenotype): New dataclass.
(update_phenotype): New function.
[phenotype_column_mapping]: New variable.
| BonfaceKilz |
| 2021-05-19 | Temporarily replace forward-slashes with underscores, since they can be inclu... | zsloan |
| 2021-05-18 | Removed len from this if statement, since an empty list evaluates to False by... | zsloan |
| 2021-05-18 | Account for boolean kwargs in compute() by storing them in a list, since they... | zsloan |
| 2021-05-18 | Account for boolean kwargs in compose_rqtl_cmd | zsloan |
| 2021-05-18 | Fixed generate_rqtl_cmd to make the kwarg hash from a combination of keywords... | zsloan |
| 2021-05-18 | Fixed variety of issues detected by pylint | zsloan |
| 2021-05-17 | Created compose_rqtl_command and generate_rqtl_command to create the actual c... | zsloan |
| 2021-05-17 | Read in kwargs fromrequest and pass the command, tmpdir, and kwargs to genera... | zsloan |
| 2021-05-17 | Added RQTL_WRAPPER_CMD (which is fetched from environment) in settings.py | zsloan |
| 2021-05-17 | Add rqtl.py for rqtl endpoints | zsloan |
| 2021-05-17 | Register rqtl blueprint | zsloan |
| 2021-05-15 | resolve merge conflict | Alexander Kabui |
| 2021-05-15 | Merge branch 'main' into feature/minor-fixes | Alexander Kabui |
| 2021-05-15 | index lit tuple result | Alexander Kabui |
| 2021-05-13 | Add end-point for running an rQTL program...* gn3/api/general.py (run_r_qtl): New function.
* gn3/settings.py: New variable.
| BonfaceKilz |
| 2021-05-13 | Rename file_utils to fs_helpers...Generally avoid naming things with a "utils" prefix/ suffix since it
encourages contributors to dump any new functions there; and over time, as the
code grows, things get messy...
| BonfaceKilz |
| 2021-05-13 | computations: correlations: Apply pep-8 | BonfaceKilz |
| 2021-05-12 | delete unused functions | Alexander Kabui |
