genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Expand)	Author
2021-06-16	Fixed spelling of coeffient to coefficient	zsloan
2021-06-07	Rename json_data column to json_diff_data	BonfaceKilz
2021-06-07	gn3: db: Fix how columns from tables is resolved	BonfaceKilz
2021-06-07	gn3: db: Add "id_" property to metadata_audit class and mapping	BonfaceKilz
2021-06-07	gn3: db: Add "fetchall" method.	BonfaceKilz
2021-06-07	gn3: metadata_audit: Make props for MetadataAudit class optional	BonfaceKilz
2021-06-07	gn3: db: Make "WHERE" clause optional...* gn3/db/__init__.py (fetchone): Make "WHERE" an Optional arg.	BonfaceKilz
2021-06-07	gn3: db: Use correct DATACLASSMAP entry from metadata_audit	BonfaceKilz
2021-06-07	gn3: db: sort imports	BonfaceKilz
2021-06-03	gn3: db: Remove "escape_string" from imports...We use prepared statements, so no need to have this.	BonfaceKilz
2021-06-03	Use prepared statements for FETCH sql function	BonfaceKilz
2021-06-03	gn3: db: Replace items() with keys()...* gn3/db/__init__.py (diff_from_dict): We only use the keys of the dict!	BonfaceKilz
2021-06-03	Use prepared statements for UPDATE sql function	BonfaceKilz
2021-06-03	gn3: db: Add new function for doing sql INSERT	BonfaceKilz
2021-06-03	Add data structures for the table metadata_audit	BonfaceKilz
2021-06-03	gn3: db: Add spacing before around "AND" in sql clause	BonfaceKilz
2021-06-03	Get the diff between 2 dicts and return that as a dict	BonfaceKilz
2021-06-03	gn3: db: Return None if data and where are empty	BonfaceKilz
2021-05-30	fix index error (#16)	Alexander Kabui
2021-05-26	Move the methods, "update" and "fetch", to gn3.db	BonfaceKilz
2021-05-26	db: phenotypes: Fix publication_mapping	BonfaceKilz
2021-05-26	db: phenotypes: Fix typo	BonfaceKilz
2021-05-20	db: phenotypes: Add function for fetching a single result...* gn3/db/phenotypes.py (fetchone): New function.	BonfaceKilz
2021-05-20	db: phenotypes: Add a dataclass map...Maps a string to it's dataclass.	BonfaceKilz
2021-05-20	db: phenotypes: Add Publication table mapping	BonfaceKilz
2021-05-20	db: phenotypes: Rename phenotype_column_mapping	BonfaceKilz
2021-05-20	db: phenotypes: Add Publication dataclass and mapping	BonfaceKilz
2021-05-20	db: phenotypes: Generalise the update function...* gn3/db/phenotypes.py (update_phenotype): Delete it. (update): New, more general function.	BonfaceKilz
2021-05-20	db: phenotypes: Map a table to it's relevant dict mapping	BonfaceKilz
2021-05-20	db: phenotypes: Add type for Dataclass...See: https://www.py4u.net/discuss/188952	BonfaceKilz
2021-05-20	db: phenotypes: Put mapping def after dataclass	BonfaceKilz
2021-05-20	db: phenotypes: Add phenotype table mapping	BonfaceKilz
2021-05-20	db: phenotypes: Add dataclass to represent PublishXRef	BonfaceKilz
2021-05-20	db: phenotype: Make "pylint: disable=[R0902]" global for file	BonfaceKilz
2021-05-20	db: phenotypes: Add a way of updating the Phenotype table...* gn3/db/phenotypes.py (Phenotype): New dataclass. (update_phenotype): New function. [phenotype_column_mapping]: New variable.	BonfaceKilz
2021-05-15	resolve merge conflict	Alexander Kabui
2021-05-15	Merge branch 'main' into feature/minor-fixes	Alexander Kabui
2021-05-15	index lit tuple result	Alexander Kabui
2021-05-13	Add end-point for running an rQTL program...* gn3/api/general.py (run_r_qtl): New function. * gn3/settings.py: New variable.	BonfaceKilz
2021-05-13	Rename file_utils to fs_helpers...Generally avoid naming things with a "utils" prefix/ suffix since it encourages contributors to dump any new functions there; and over time, as the code grows, things get messy...	BonfaceKilz
2021-05-13	computations: correlations: Apply pep-8	BonfaceKilz
2021-05-12	delete unused functions	Alexander Kabui
2021-05-12	rename lit_correlation_for_trait_list to lit_correlation_for_trait	Alexander Kabui
2021-05-12	rename tissue_correlation_for_trait_list with tissue_correlation_for_trait	Alexander Kabui
2021-05-12	rename p_val ro tissue_p_value for tissue_results	Alexander Kabui
2021-05-10	db: species: Add method for fetching all species	BonfaceKilz
2021-05-08	db: species: Fetch chromosomes using a group or species name...* gn3/db/species.py (get_chromosome): New function.	BonfaceKilz
2021-05-08	gn3: db_utils: Remove mypy ignore stub...MySQLdb is already ignored in ".mypy.ini", added in 88c33df.	BonfaceKilz
2021-05-08	Fix pep-8 errors	BonfaceKilz
2021-05-08	db: traits: Add extra method for looking up webqtl datasets	BonfaceKilz