| Age | Commit message (Expand) | Author |
|---|---|---|
| 2021-09-27 | fix merge conflicts | Alexander Kabui |
| 2021-09-20 | Enable Cross-Origin Resource Sharing...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/api/heatmaps.py: Fix bugs in data parsing * gn3/app.py: enable CORS * gn3/settings.py: add flask-cors configurations * guix.scm: Add flask-cors dependency For easier testing of the heatmaps generation feature, this commit activates the cross-origin resource sharing for all "localhost" origins. | Frederick Muriuki Muriithi |
| 2021-09-16 | Add WGCNA_SCRIT env to settings | Alexander Kabui |
| 2021-08-31 | Provide utilities for genotype files...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/db/genotypes.py: New module * gn3/settings.py: Add new configuration variable * qtlfilesexport.py: Test out new code Add a module containing functions dealing with the genotype files. Add a configuration variable to point to the location of the genotype files. | Muriithi Frederick Muriuki |
| 2021-08-30 | Implement module for interfacing with rust-qtlreaper...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/computations/heatmap.py: move `generate_traits_file` function to new module * gn3/computations/qtlreaper.py: new module to interface with the `rust-qtlreaper` utility. * gn3/settings.py: Provide setting for the path to the `rust-qtlreaper` utility * qtlfilesexport.py: Move `random_string` function to new module. Update to use functions in new module. Provide a module with functions to be used to interface with `rust-qtlreaper`. This module essentially contains all the functions that are needed to build the files needed for, and to run the qtlreaper utility. | Muriithi Frederick Muriuki |
| 2021-06-23 | minor fixes for biweight script | Alexander Kabui |
| 2021-06-20 | merge main | Alexander Kabui |
| 2021-06-20 | make requested changes to biweight | Alexander Kabui |
| 2021-05-17 | Added RQTL_WRAPPER_CMD (which is fetched from environment) in settings.py | zsloan |
| 2021-05-13 | Add end-point for running an rQTL program...* gn3/api/general.py (run_r_qtl): New function. * gn3/settings.py: New variable. | BonfaceKilz |
| 2021-05-03 | modify default SQL_URI | Alexander Kabui |
| 2021-04-12 | fix merge conflict | Alexander Kabui |
| 2021-04-12 | Integrate correlation API...- add new api for gn2-gn3 sample r integration - delete map for sample list to values - add db util file - add python msql-client dependency - add db for fetching lit correlation results - add unittests for db utils - add tests for db_utils - modify api for fetching lit correlation results - refactor Mock Database Connector and unittests - add sql url parser - add SQL URI env variable - refactor code for db utils - modify return data for lit correlation - refactor tissue correlation endpoint - replace db_instance with conn | Alexander Kabui |
| 2021-03-31 | add mysqlclient in guix...add env variable for GN2_URL | Alexander Kabui |
| 2021-03-23 | Use ipfs to get genotype files | BonfaceKilz |
| 2021-03-15 | Delete redundant gn3/config.py...All default confs should go to one place: gn3/setting.py * gn3/app.py: Delete get_config. Apply pep-8 formatting. * gn3/config.py: Delete it. Move conf options to... * gn3/settings.py: ... here. | BonfaceKilz |
| 2021-03-08 | Replace APP_DEFAULTS dict with actual conf params | BonfaceKilz |
| 2021-03-08 | Make the name of the redis job queue configurable | BonfaceKilz |
| 2021-02-24 | Add GENODIR extra param | BonfaceKilz |
| 2021-02-16 | Add extra default config for bcrypt | BonfaceKilz |
| 2021-02-15 | Add default redis config | BonfaceKilz |
| 2021-02-12 | Add configuration file for the project | BonfaceKilz |
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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