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path: root/gn3/settings.py
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2021-06-23minor fixes for biweight scriptAlexander Kabui
2021-06-20merge mainAlexander Kabui
2021-06-20make requested changes to biweightAlexander Kabui
2021-05-17Added RQTL_WRAPPER_CMD (which is fetched from environment) in settings.pyzsloan
2021-05-13Add end-point for running an rQTL programBonfaceKilz
* gn3/api/general.py (run_r_qtl): New function. * gn3/settings.py: New variable.
2021-05-03modify default SQL_URIAlexander Kabui
2021-04-12fix merge conflictAlexander Kabui
2021-04-12Integrate correlation APIAlexander Kabui
- add new api for gn2-gn3 sample r integration - delete map for sample list to values - add db util file - add python msql-client dependency - add db for fetching lit correlation results - add unittests for db utils - add tests for db_utils - modify api for fetching lit correlation results - refactor Mock Database Connector and unittests - add sql url parser - add SQL URI env variable - refactor code for db utils - modify return data for lit correlation - refactor tissue correlation endpoint - replace db_instance with conn
2021-03-31add mysqlclient in guixAlexander Kabui
add env variable for GN2_URL
2021-03-23Use ipfs to get genotype filesBonfaceKilz
2021-03-15Delete redundant gn3/config.pyBonfaceKilz
All default confs should go to one place: gn3/setting.py * gn3/app.py: Delete get_config. Apply pep-8 formatting. * gn3/config.py: Delete it. Move conf options to... * gn3/settings.py: ... here.
2021-03-08Replace APP_DEFAULTS dict with actual conf paramsBonfaceKilz
2021-03-08Make the name of the redis job queue configurableBonfaceKilz
2021-02-24Add GENODIR extra paramBonfaceKilz
2021-02-16Add extra default config for bcryptBonfaceKilz
2021-02-15Add default redis configBonfaceKilz
2021-02-12Add configuration file for the projectBonfaceKilz