| Age | Commit message (Expand) | Author |
|---|
| 2022-06-21 | gn3: fs_helpers: Fix pylint errors...* gn3/fs_helpers.py: Remove unused "pathlib" import.
(cache_ipfs_file): Disable "unused-argument" warting.
| BonfaceKilz |
| 2022-06-21 | gn3: fs_helpers: Remove ipfshttpclient...This library pollutes the Genenetwork2 profile with an old version
"dataclasses" thereby causing it to fail.
| BonfaceKilz |
| 2022-03-11 | Fix some linting issues | Frederick Muriuki Muriithi |
| 2022-02-24 | gn3: Explicitly specify UTF-8 to be the file encoding....When the encoding is not specified explicitly, the system default encoding is
used. This is not recommended.
* gn3/computations/ctl.py (call_ctl_script),
gn3/computations/gemma.py (generate_pheno_txt_file),
gn3/computations/parsers.py (parse_genofile),
gn3/computations/partial_correlations.py (partial_correlations_fast),
gn3/computations/rqtl.py (process_rqtl_output, process_perm_output),
gn3/computations/wgcna.py (dump_wgcna_data, call_wgcna_script),
gn3/fs_helpers.py (jsonfile_to_dict): Explicitly specify UTF-8 to be the file
encoding.
*
tests/unit/computations/test_gemma.py (TestGemma.test_generate_pheno_txt_file),
tests/unit/computations/test_wgcna.py (TestWgcna.test_create_json_file): Test
for call to open with encoding='utf-8' argument.
| Arun Isaac |
| 2022-02-21 | Fix minor issues introduced while fixing linting errors | Frederick Muriuki Muriithi |
| 2022-02-21 | Fix a myriad of linter issues...* Use `with` in place of plain `open`
* Use f-strings in place of `str.format()`
* Remove string interpolation from queries - provide data as query parameters
* other minor fixes
| Frederick Muriuki Muriithi |
| 2021-05-13 | Rename file_utils to fs_helpers...Generally avoid naming things with a "utils" prefix/ suffix since it
encourages contributors to dump any new functions there; and over time, as the
code grows, things get messy...
| BonfaceKilz |
