| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-02-24 | gn3: Explicitly specify UTF-8 to be the file encoding. | Arun Isaac | |
| When the encoding is not specified explicitly, the system default encoding is used. This is not recommended. * gn3/computations/ctl.py (call_ctl_script), gn3/computations/gemma.py (generate_pheno_txt_file), gn3/computations/parsers.py (parse_genofile), gn3/computations/partial_correlations.py (partial_correlations_fast), gn3/computations/rqtl.py (process_rqtl_output, process_perm_output), gn3/computations/wgcna.py (dump_wgcna_data, call_wgcna_script), gn3/fs_helpers.py (jsonfile_to_dict): Explicitly specify UTF-8 to be the file encoding. * tests/unit/computations/test_gemma.py (TestGemma.test_generate_pheno_txt_file), tests/unit/computations/test_wgcna.py (TestWgcna.test_create_json_file): Test for call to open with encoding='utf-8' argument. | |||
| 2022-02-21 | Fix minor issues introduced while fixing linting errors | Frederick Muriuki Muriithi | |
| 2022-02-21 | Fix a myriad of linter issues | Frederick Muriuki Muriithi | |
| * Use `with` in place of plain `open` * Use f-strings in place of `str.format()` * Remove string interpolation from queries - provide data as query parameters * other minor fixes | |||
| 2021-05-13 | Rename file_utils to fs_helpers | BonfaceKilz | |
| Generally avoid naming things with a "utils" prefix/ suffix since it encourages contributors to dump any new functions there; and over time, as the code grows, things get messy... | |||
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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