genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2021-03-08	Create a more generic procedure for getting hash values of files	BonfaceKilz
	* gn3/file_utils.py (get_hash_of_values): New procedure. (get_dir_hash): Use more generic "get_hash_of_values" to compute the hash of a directory.
2021-03-08	Replace APP_DEFAULTS dict with actual conf params	BonfaceKilz

2021-03-08	Delete "lookup_file" procedure	BonfaceKilz

2021-03-08	Extract files to "/TMPDIR/TOKEN"	BonfaceKilz
	TOKEN is the user token * gn3/file_utils.py (extract_uploaded_file): Add extra param "token". If a token is empty, create a new directory based off that token. * tests/unit/test_file_utils.py: Update failing tests.
2021-03-08	Move "generate_random_n_string" to file_utils	BonfaceKilz
	* gn3/computations/gemma.py (generaten_random_n_string): Move to... * gn3/file_utils.py: ... here.
2021-02-16	Add procedure for uploading gzipped file	BonfaceKilz
	* gn3/file_utils.py (extract_uploaded_file): New procedure. * tests/unit/test_file_utils.py: Test cases for ^^. * tests/unit/upload-data.tar.gz: New test data.
2021-02-12	Add configuration file for the project	BonfaceKilz

2021-02-12	Use sorted list of files when calculating md5sums of directory	BonfaceKilz
	* gn3/file_utils.py (get_dir_hash): Sort list of files before calculating their md5sums. * tests/unit/test_file_utils.py (test_get_dir_hash): Update test-case md5sum.
2021-02-12	Add new procedure to return a python dict from a json file	BonfaceKilz
	* gn3/file_utils.py (jsonfile_to_dict): New procedure * tests/unit/test_file_utils.py: New test-cases.
2021-02-12	Add new procedure for looking up files in a given ENV variable	BonfaceKilz
	* gn3/file_utils.py (lookup_file): New function. * tests/unit/test_file_utils.py: New test cases for ^^.
2021-02-12	Add function for computing the hash of a directory	BonfaceKilz