genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2022-08-22	Use non-default MySQL port if present	Frederick Muriuki Muriithi
	By default, MySQL/Mariadb connects at port 3306, however, the configuration variable `SQL_URI` could contain a different port. In that case, this commit allows the system to connect to the non-default port.
2022-03-11	Fix some linting issues	Frederick Muriuki Muriithi

2022-03-08	Create database connections within context managers	Frederick Muriuki Muriithi
	Use the `with` context manager to open database connections, so as to ensure that those connections are closed once the call is completed. This hopefully avoids the 'too many connections' error
2021-05-08	gn3: db_utils: Remove mypy ignore stub	BonfaceKilz
	MySQLdb is already ignored in ".mypy.ini", added in 88c33df.
2021-05-08	Fix pep-8 errors	BonfaceKilz

2021-04-12	Integrate correlation API	Alexander Kabui
	- add new api for gn2-gn3 sample r integration - delete map for sample list to values - add db util file - add python msql-client dependency - add db for fetching lit correlation results - add unittests for db utils - add tests for db_utils - modify api for fetching lit correlation results - refactor Mock Database Connector and unittests - add sql url parser - add SQL URI env variable - refactor code for db utils - modify return data for lit correlation - refactor tissue correlation endpoint - replace db_instance with conn