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AgeCommit message (Expand)Author
2023-07-26Fetch `metadata_audit` trail with direct query functions.Frederick Muriuki Muriithi
2023-07-26Function to create a metadata audit trail.Frederick Muriuki Muriithi
2023-07-21Update a Publication in the database.Frederick Muriuki Muriithi
2023-07-21Fetch a publication by its PubMed IDFrederick Muriuki Muriithi
2023-07-21Rename function: fetch_publication ==> fetch_publication_by_idFrederick Muriuki Muriithi
2023-07-19Extract code dealing with ProbeSets to their own module.Frederick Muriuki Muriithi
2023-07-19Extract reusable code to separate moduleFrederick Muriuki Muriithi
2023-07-18Bug: Change from `_id` to `id_` to avoid downstream breakage.Frederick Muriuki Muriithi
2023-07-18Fix wrong import, and typing issues.Frederick Muriuki Muriithi
2023-07-18Fetch a single publication by `PublicationId`Frederick Muriuki Muriithi
2023-07-18Fetch metadata for a single phenotype.Frederick Muriuki Muriithi
2023-07-18Fetch single phenotype trait by `dataset_id` and `trait_name`.Frederick Muriuki Muriithi
2023-07-18Bug: Fetch group name by dataset_idFrederick Muriuki Muriithi
2023-07-17Fix dict key nameFrederick Muriuki Muriithi
2023-07-12Bug: Set the `data_exists` variable within the context managerFrederick Muriuki Muriithi
2023-07-12Bug: Retrieve configs from app, not environmentFrederick Muriuki Muriithi
2023-06-15Fetch genotypes from virtuosoMunyoki Kilyungi
2023-06-12Delete unused importMunyoki Kilyungi
2023-06-12Fetch phenotypes from virtuosoMunyoki Kilyungi
2023-06-12Delete unused get_trait_metadata functionMunyoki Kilyungi
2023-06-07Add publication end-pointMunyoki Kilyungi
2023-06-07Nest duplicate entries into a list from a sparql resultMunyoki Kilyungi
2023-06-06Pass geoSeries as a URLMunyoki Kilyungi
2023-06-06Rename gn:geoPlatform -> gn:geoPlatformUrlMunyoki Kilyungi
2023-06-06Match how dataset metadata is fetched with GN1Munyoki Kilyungi
2023-06-06Replace taxon prefix with ncbiTaxon which references NCBIMunyoki Kilyungi
2023-06-02Replace SELECT with CONSTRUCT when fetching a dataset's metadataMunyoki Kilyungi
2023-06-02Create a function for stripping the last bit from a URLMunyoki Kilyungi
2023-05-22Use string literal concatenation to make genofile_path line shorterzsloan
2023-05-22Fix quotes when setting genofile_pathzsloan
2023-05-22Fix return typing for get_trait_sample_datazsloan
2023-05-22Change type from 'any' to 'Any'zsloan
2023-05-22Use f-string for setting genofile_pathzsloan
2023-05-22Include encoding in open statement to address pylint W1514zsloan
2023-05-22Initialize 'line'; previous pylint complained because line might not be initi...zsloan
2023-05-22Use 'with open()' syntaxzsloan
2023-05-22Remove unused variable this_datazsloan
2023-05-22Include all samples in trait sample datazsloan
2023-05-22Fix sample data CSV query to only fetch distinct sampleszsloan
2023-05-22Fix get_trait_sample_data functionzsloan
2023-05-22Fix retrieve_sample_list function to correctly get genofile_pathzsloan
2023-05-22Commit update/insert queries, since they don't seem to be executed otherwise ...zsloan
2023-05-22Add function for retrieving group name (given group ID)zsloan
2023-05-22Add function for retrieving phenotype sample data as dictzsloan
2023-05-22Add function for retrieving samplelist from .geno filezsloan
2023-04-17Create new endpoint for fetching GeneRIF entriesMunyoki Kilyungi
2023-03-20Disable fetching case-attributes when getting sample dataMunyoki Kilyungi
2023-03-17Add conn.commit() to queries in sample_data.pyzsloan
2023-03-17Change get_all_species query to order by Familyzsloan
2023-03-01Open lmdb path in readonly modeMunyoki Kilyungi