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AgeCommit message (Expand)Author
2023-05-22Fix retrieve_sample_list function to correctly get genofile_pathzsloan
2023-05-22Commit update/insert queries, since they don't seem to be executed otherwise ...zsloan
2023-05-22Add function for retrieving group name (given group ID)zsloan
2023-05-22Add function for retrieving phenotype sample data as dictzsloan
2023-05-22Add function for retrieving samplelist from .geno filezsloan
2023-04-17Create new endpoint for fetching GeneRIF entriesMunyoki Kilyungi
2023-03-20Disable fetching case-attributes when getting sample dataMunyoki Kilyungi
2023-03-17Add conn.commit() to queries in sample_data.pyzsloan
2023-03-17Change get_all_species query to order by Familyzsloan
2023-03-01Open lmdb path in readonly modeMunyoki Kilyungi
2023-03-01Fetch trait metadata from RDFMunyoki Kilyungi
2023-02-06Get the N-th matrix given N, an index valueMunyoki Kilyungi
2023-02-06Get total number of versions that a database hasMunyoki Kilyungi
2023-02-06Add method to fetch the current matrixMunyoki Kilyungi
2022-12-21gn3: (gn3.random -> gn3.chancy): Rename module to avoid conflicts.Frederick Muriuki Muriithi
2022-12-08Remove unused importFrederick Muriuki Muriithi
2022-12-06Use a dataset's name to fetch it's metadata from RDFMunyoki Kilyungi
2022-11-16Inject SPARQLWrapper as a parameterMunyoki Kilyungi
2022-11-02Re-implement RDF related code to use monads in its own moduleMunyoki Kilyungi
2022-11-02Fix pylint and mypy errorsMunyoki Kilyungi
2022-08-23Remove conn.commit() and conn.rollback()Munyoki Kilyungi
2022-06-21Replace lint code with human-readable textBonfaceKilz
2022-06-21db: correlations: Ignore pylint errorBonfaceKilz
2022-06-21db: correlations: Ignore typesBonfaceKilz
2022-06-21db: datasets.py: Ignore results from sparql.queryAndConvertBonfaceKilz
2022-05-31Extract utility functions from `fetch_all_database_data`Frederick Muriuki Muriithi
2022-05-27Move sql for CRUD operations on case-attrs from gn2 to gn3BonfaceKilz
2022-05-27Move sql for modifying case-attributes from gn2 to gn3BonfaceKilz
2022-05-27Return all the results from CaseAttributes column as isBonfaceKilz
2022-05-26Add Endpoint to get menu items for use in UIFrederick Muriuki Muriithi
2022-05-06Fix linting and typing errorsFrederick Muriuki Muriithi
2022-05-05Compute partial correlation with selected traitsFrederick Muriuki Muriithi
2022-04-12Strip any newline, tab or carriage-return chars from sample dataBonfaceKilz
2022-04-07Fix pylint errorsBonfaceKilz
2022-04-07Use case attribute id inside brackets if present during insertionsBonfaceKilz
2022-04-07Use case attribute id inside brackets if present during insertionsBonfaceKilz
2022-04-07Use case attribute id inside brackets if present during updatesBonfaceKilz
2022-04-07Add method for fetching the case_attributesBonfaceKilz
2022-04-07Run python black on fileBonfaceKilz
2022-03-14Dummy White Space commit to fix laminarBonfaceKilz
2022-03-12Remove unused importsBonfaceKilz
2022-03-12Fix mypy issuesBonfaceKilz
2022-03-12Fix pylint issuesBonfaceKilz
2022-03-12Store the first element as strain_idBonfaceKilz
2022-03-12Append the strain name when extracting "actions"BonfaceKilz
2022-03-12Apply auto-pep8 to sample_data.py and it's test fileBonfaceKilz
2022-03-12Add missing return type-annotationsBonfaceKilz
2022-03-12Update how data is updated by re-using existing functionsBonfaceKilz
2022-03-12Create action dict that's created when updating dataBonfaceKilz
2022-03-12Remove check for inserted data when inserting individual dataBonfaceKilz