genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2021-07-29	Make name retrieval more general	Muriithi Frederick Muriuki
	Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/db/traits.py: make function more general * tests/unit/db/test_traits.py: parametrize the tests Make the name retrieval more general for the different types of traits by changing the column specification and table as appropriate.
2021-07-29	Retrieve 'ProbeSet' trait name	Muriithi Frederick Muriuki
	Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/db/traits.py: new function (retrieve_probeset_trait_name) * tests/unit/db/test_traits.py: test(s) for new function Add a function to retrieve the name of a 'ProbeSet' trait in a manner similar to genenetwork1's retrieval of the same, as implemented here https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/base/webqtlDataset.py#L140-154 Unlike in genenetwork1, we do not mutate an object, instead, we return the values as retrieved from the database, and the caller will deal with the returned values as appropriate.
2021-05-08	Fix pep-8 errors	BonfaceKilz

2021-05-08	db: traits: Add extra method for looking up webqtl datasets	BonfaceKilz

2021-05-08	db: traits: Update method for inserting publication method	BonfaceKilz

2021-05-08	Add method for inserting publication_data	BonfaceKilz

2021-05-08	Add webqtlCaseData DS to keep track of case data in one trait	BonfaceKilz

2021-05-08	Replace namedtuple with a dataclass	BonfaceKilz

2021-05-08	Add method for inserting phenotypes	BonfaceKilz

2021-05-08	Add method for inserting publications	BonfaceKilz

2021-05-08	Add method to fetch riset name and id	BonfaceKilz