| Age | Commit message (Expand) | Author |
|---|---|---|
| 2021-07-29 | Merge branch 'main' into Feature/Update-db-from-csv-data | BonfaceKilz |
| 2021-07-29 | Add method for updating values from a sample dataset...* gn3/db/traits.py (update_sample_data): New function. * tests/unit/db/test_traits.py: New test cases for ^^. | BonfaceKilz |
| 2021-07-29 | Add type annotations to the function...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * Add some type annotations to the functions to reduce the chances of bugs creeping into the code. | Muriithi Frederick Muriuki |
| 2021-07-29 | Retrieve trait information...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/db/traits.py: add functions to retrieve traits information * tests/unit/db/test_traits.py: add tests for new function Add functions to retrieve traits information as is done in genenetwork1 https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/base/webqtlTrait.py#L397-L456 At this point, the data retrieval functions are probably incomplete, as there is more of the `retrieveInfo` function in GN1 that has not been considered as of this commit. | Muriithi Frederick Muriuki |
| 2021-07-29 | Make name retrieval more general...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/db/traits.py: make function more general * tests/unit/db/test_traits.py: parametrize the tests Make the name retrieval more general for the different types of traits by changing the column specification and table as appropriate. | Muriithi Frederick Muriuki |
| 2021-07-29 | Retrieve 'ProbeSet' trait name...Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * gn3/db/traits.py: new function (retrieve_probeset_trait_name) * tests/unit/db/test_traits.py: test(s) for new function Add a function to retrieve the name of a 'ProbeSet' trait in a manner similar to genenetwork1's retrieval of the same, as implemented here https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/base/webqtlDataset.py#L140-154 Unlike in genenetwork1, we do not mutate an object, instead, we return the values as retrieved from the database, and the caller will deal with the returned values as appropriate. | Muriithi Frederick Muriuki |
| 2021-07-29 | db: traits: Remove publishdata column | BonfaceKilz |
| 2021-07-26 | db: traits: Fetch sample_data from a trait in csv form | BonfaceKilz |
| 2021-07-26 | db: traits: Remove unused functions | BonfaceKilz |
| 2021-05-08 | Fix pep-8 errors | BonfaceKilz |
| 2021-05-08 | db: traits: Add extra method for looking up webqtl datasets | BonfaceKilz |
| 2021-05-08 | db: traits: Update method for inserting publication method | BonfaceKilz |
| 2021-05-08 | Add method for inserting publication_data | BonfaceKilz |
| 2021-05-08 | Add webqtlCaseData DS to keep track of case data in one trait | BonfaceKilz |
| 2021-05-08 | Replace namedtuple with a dataclass | BonfaceKilz |
| 2021-05-08 | Add method for inserting phenotypes | BonfaceKilz |
| 2021-05-08 | Add method for inserting publications | BonfaceKilz |
| 2021-05-08 | Add method to fetch riset name and id | BonfaceKilz |
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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