genenetwork3 - GeneNetwork3 REST API for data science and machine learning

Age	Commit message (Collapse)	Author
2023-09-05	Replace "escape_string" with safe-query parameters	Munyoki Kilyungi
	Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-03-17	Change get_all_species query to order by Family	zsloan

2021-11-29	Fix query parametrisation	Frederick Muriuki Muriithi
	Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Pass parameters to the query the way the MySQL driver expects.
2021-11-29	Retrieve the species name given the group	Frederick Muriuki Muriithi
	Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Migrate the `web.webqtl.dbFunction.webqtlDatabaseFunction.retrieveSpecies` in GeneNetwork1 to `gn3.db.species.species_name` in GeneNetwork3 to enable the retrieval of the species name, given the group name (formerly RISet).
2021-11-04	Add missing comma	Frederick Muriuki Muriithi
	Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
2021-11-04	Remove if clauses: replace with dict	Frederick Muriuki Muriithi
	Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Remove the if clauses to simplify the code flow: use a dictionary of queries and select the appropriate query from the dictionary instead.
2021-10-21	Implement `translate_to_mouse_gene_id` function	Frederick Muriuki Muriithi
	Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Migrate the `web.webqtl.correlation/CorrelationPage.translateToMouseGeneID` function in GN1 to GN3. This is a function that retrieves data from the database, and therefore uses a system outside of our code, therefore, the function does not have a corresponding unit test. This kind of function will probably need to be tested at the integration or system tests level, where we test that our code interacts correcly with any and all external systems that it should.
2021-05-10	db: species: Add method for fetching all species	BonfaceKilz

2021-05-08	db: species: Fetch chromosomes using a group or species name	BonfaceKilz
	* gn3/db/species.py (get_chromosome): New function.