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path: root/gn3/db/sample_data.py
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2022-03-12Fetch id's separately for the insertion edge-caseBonfaceKilz
* gn3/db/sample_data (get_sample_data_ids): Add an extra condition that caters for inserts: during inserts, joins won't work when fetching the strain_id, publishdata_id, and strain_name. In this case, just create 2 separate queries to do that work.
2022-03-12Extract a strain name given a csv string and it's headerBonfaceKilz
* gn3/csvcmp.py (extract_strain_name): New function. * gn3/db/sample_data (delete_sample_data): Use the aforementioned function. (insert_sample_data): Ditto. * tests/unit/test_csvcmp: Test cases for above.
2022-03-12Allow deleting case-attribute data during deletionBonfaceKilz
* gn3/db/sample_data.py (delete_sample_data): Modify this function to allow deleting case-attribute values.
2022-03-12Allow inserting case-attribute data during insertsBonfaceKilz
* gn3/db/sample_data.py (insert_sample_data): Modify this function to allow inserting case-attribute values.
2022-03-12Fetch InbredSetIdBonfaceKilz
* gn3/db/sample_data.py (get_sample_data_ids): Extend to also fetch InbredSetId. (update_sample_data): Discard the returned value of InbredSetId. (delete_sample_data): Ditto.
2022-03-12Create a new function for retrieving strain_id and publishdata_idBonfaceKilz
* gn3/db/sample_data.py: Import Any, Tuple. (get_sample_data_ids): New function that fetches the strain_id and publishdata_id of a given data point. (update_sample_data): Use `get_sample_data_ids`. (delete_sample_data): Ditto. (insert_sample_data): Ditto.
2022-03-12Move operations on sample_data to it's own moduleBonfaceKilz